Gene Information

Name : gacA (PSPTO_3024)
Accession : NP_792819.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator GacA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 3400314 - 3400958 bp
Length : 645 bp
Strand : -
Note : see PMID:20190049 for expression data

DNA sequence : 
TTGATTAAGGTGCTAGTTGTCGATGACCATGACCTTGTTCGGACAGGCATCACACGCATGCTGGCCGACATTGAAGGTCT
ACAGGTTGTCGGGCAGGCCGATTCCGGTGAGGAATCGCTGAAGAAAGCGCGGGAGCTCAAGCCCGATGTGGTGCTCATGG
ATGTCAAGATGCCCGGCATTGGCGGTCTGGAGGCAACCCGCAAGATGTTGCGTAGCCATCCTGATATCAAGGTCGTGGCA
GTCACTGCCTGTGAAGAAGACCCGTTCCCGACCCGCTTGTTGCAAGCCGGTGCCGCGGGTTACATGACCAAGGGCGCTGG
GCTTGCCGAGATGGTTCAGGCCATTCGCCTGGTGTTCGCCGGTCAGCGCTACATCAGCCCGCAGATTGCCCAGCAACTTG
CGTTGAAATCGTTTCAGCCGCAGGTCAACAACTCGCCGTTCGATCTGCTGTCCGAACGTGAAATCCAGATTGCCCTGATG
ATTGTCGGCTGCCAGAAAGTCCAGACCATCTCGGACAAGCTGTGCCTGTCACCGAAAACCGTCAATACCTACCGCTACCG
TATCTTTGAAAAGCTTTCGATCAGCAGTGATGTTGAACTGGCTTTGCTCGCTGTACGTCACGGCATGGTTGATGCCAGCG
CCTGA

Protein sequence : 
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGIGGLEATRKMLRSHPDIKVVA
VTACEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSFQPQVNNSPFDLLSEREIQIALM
IVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMVDASA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 2e-58 58
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 2e-58 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gacA NP_792819.1 DNA-binding response regulator GacA VFG1889 Protein 2e-55 54