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Name : gabD-3 (PSPTO_2680) Accession : NP_792487.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : - Position : 2975356 - 2976786 bp Length : 1431 bp Strand : + Note : see PMID:20190049 for expression data; similar to GP:15140237, and SP:P25526; identified by sequence similarity; putative DNA sequence : ATGTATCCAGACGTACAGCTTTATATCGATGGCCAATGGCGCGCGAGCCGCGATGGTCGCTCCATTCCTGTTATAGACCC TGCTACCGGCCAGTCGCTGGGCAGCGTGGCGCATGCCGGTATCGCCGATCTTGATGAAGCACTCTCAGCAGCGGAGCGTG GCTTTGCCACCTGGCGCGCGACCTCGGCGTATGACCGTTACAAGCTGATGCAGAAAGCCGCCGATCTGGTTCGTGAGCGG GCGGACAGCATCGCCAGAATCATGACTCAGGAACAAGGCAAGCCGCTGGCTGAGGCGCGCATGGAAACCCTGTCGGCTGC TGACGTCATCGACTGGCTGGCTGAAGAGGGCCGTCGCAGCTATGGCCGTATCGTGCCGTCGCGTGGCGTGTCCATCGAGC AGAAGGTTATCAAGGAGCCCGTCGGCCCGGTTGCTGCGTTCACACCGTGGAACTTCCCGATCAATCAGGTGGTGCGCAAG CTGTCTTCGGCGCTGGCAGCCGGTTGCTCGATCATCGTCAAAGCCCCGGAAGAAACTCCGGGGTCACCTGCCGAGCTGAT TCGGGCGTTTGCCGATGCGGGCGTTCCGGCAGGCGTCATTGGTTTGGTGTATGGCGATCCGGCGGAAATTTCCGGCTACC TGATTCCGCACCCGGTTATTCGCAAAGTGACTTTTACCGGCTCTACGCCGGTCGGCAAACAACTCGCGGCATTGGCCGGC AAGCACATGAAGCGCGCCACCATGGAGCTGGGCGGGCATGCGCCAGCACTGGTGTTCGACGACGCCGACATTGACCTGGC GGCTCGCGTGCTGGCCACCGCCAAGTTCCGCAACGCCGGGCAGGTCTGCGTATCGCCGACGCGTATTCTGGTGCAGCGCA AGGTGTTGCAGGCGTTTACCGAGAAATTCGTCGGCCTGACCCGTGAGATCAAAGTGGGCAACGGTCTGGAGTCGGGTACG ACCATGGGCCCGGTGGCCAATGATCGACGTATCCCGGCGCTGGTTGATCTGATTGAAGACGCAGTCAGTGCTGGCGCGAC CGTTTCTGCAGGTGGCAAGGCTGTCGAGGGACAGGGCTACTTCTTCGAGCCGACCGTACTCAGTGGCCTGACGCCAGCCA TGCGCATCATGAACGAAGAACCGTTCGGGCCGGTTGCGCTACTGGTGCCGTTCGACACCGTGGAAGAAGCCATTGTCGAG TCCAACCGGGTGCCGTTCGGGCTGGCGTCCTACGCCTTCACGACCTCGATGAAGACCGCTCAGGCGCTGAGCACCTACAT CGAAGCGGGCATGCTGTCGATCAACCACCAGGGCATCGGCTTGCCGGAAGTGCCGTTCGGCGGGATCAAGGATTCCGGCT ACGGTTCCGAAGGCGGCACCGAGGCCATCGAGGCCTACCTGAACACCAAACTGGTCACTCAATACAGCTGA Protein sequence : MYPDVQLYIDGQWRASRDGRSIPVIDPATGQSLGSVAHAGIADLDEALSAAERGFATWRATSAYDRYKLMQKAADLVRER ADSIARIMTQEQGKPLAEARMETLSAADVIDWLAEEGRRSYGRIVPSRGVSIEQKVIKEPVGPVAAFTPWNFPINQVVRK LSSALAAGCSIIVKAPEETPGSPAELIRAFADAGVPAGVIGLVYGDPAEISGYLIPHPVIRKVTFTGSTPVGKQLAALAG KHMKRATMELGGHAPALVFDDADIDLAARVLATAKFRNAGQVCVSPTRILVQRKVLQAFTEKFVGLTREIKVGNGLESGT TMGPVANDRRIPALVDLIEDAVSAGATVSAGGKAVEGQGYFFEPTVLSGLTPAMRIMNEEPFGPVALLVPFDTVEEAIVE SNRVPFGLASYAFTTSMKTAQALSTYIEAGMLSINHQGIGLPEVPFGGIKDSGYGSEGGTEAIEAYLNTKLVTQYS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 3e-78 | 42 |
