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Name : topB (PSPTO_2478) Accession : NP_792290.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2736166 - 2738154 bp Length : 1989 bp Strand : - Note : similar to GP:6513858, and SP:P14294; identified by sequence similarity; putative DNA sequence : ATGCGGCTGTTTCTTTGCGAAAAACCTTCCCAGGCCAAGGACATTGCGGCTGCGCTTGGCGCAACCCGCCGTGGCGATGG CTGCTGGGTCGGTGCCAGCGCAACCGTCACCTGGTGCATCGGCCATTTGCTCGAAACCGCTCCGCCCGATGCCTACGATG CGCGCTACAAACGCTGGGTGCTGGAAGACCTGCCCATCGTGCCCGAGAAGTGGAAGATGCTGGTCAAACCCAGAACGGCC AGCCAGTTCAAGGCCGTCAAGCGGTTGCTGGGCGAAGCGAACGAGCTGGTAATCGCCACCGACGCTGACCGTGAAGGCGA AATGATCGCCCGCGAACTGGTCGAGCATTGCCGCTATCGCGGACCGATTCAGCGTTTGTGGCTGTCGGCGCTGGATGACG CCTCCATTCGCAAGGCGCTGGCAGCGCTCAAGCCCGGCGCCGACACCTTCAGCCTGTATCACTCGGCATTGGGCCGGTCC CGCGCAGACTGGCTGATCGGCATGAACATGAGTCGTCTGTTCACGTTGCTGGGTCGCCAATCGGGCTACCAGGGCGTATT GCCAGTCGGCCGCGTGCAAACCCCGACCCTGCGCCTGGTAGTGGACCGGGATCGCAGCATCGCAGATTTCGTGCCCGCGC CCTTCTGGGCCATCGACGTCAAACTGCTGCACGAAAATCAGGCGTTCATCGCTCAATGGCGCGCTCCGTCGGACGCCTGT GACGATCAGGATCGCTGCCTGAATCAGCCACTTGCGCAACAGGCTGCCGACGCCATGCGCCATGCTGCCAGCGCACGGTT GGTCAAGCTGCGCACCGAGCGGATGCGCGAAGCCGCACCCTTGCCTTTCGACCTAGGCACCCTGCAGGAAATATGCTCGA AAAAACTCGGCCTCGGCGCGCAGGAAACCCTTGATATCGCCCAGTCGCTGTATGAAACCCACAAGGTCATCACGTATCCG CGCAGCGATTGCGGCTACCTGCCGAACAGTCAGCATGGCGAAGCGGCGGGTATCATCACTGCGCTGGGCAAGACCGATCC CGCGCTGGCCGGCCTGCTGCCGCACCTAGACCCGCAACGCCGCTCCCGCGCCTGGAACGACGCAAAAGTCACTGCTCACC ACGGCATTATCCCCACCGCGGCGGTGCGCGGCGTCGAGCGCCTGATCGGCAAGCCGCGCGCGGTCTACACCCTGATCAGG GCGCGCTATCTGGCGCAGTTTCTGCCCAACCACGAATATGACCGCACCCAGGCTGACTTCGACTGCGCAGGCCAGGCGCT GCGAGCGGTGGGCAAACAGATCGTCGAGCCCGGCTGGAAACGCGCCATGCCCGAAGCCCTGGCCCCGGCCAAAGGTCGCG AAGCGCCTGCGCCGCAGCCCTTGCCTGCGTTGTTTCAGGGCTGCGAATGCGCCGTCGCCGACGTCATCCTCAAAGATCTC TGGACCCAGCCACCCAAGCCCTTCACCGAAGGCGACCTGATCAAGGCCATGAAAAACGTCGCCAAGCTGGTAGAAGACCC GCTGCTCAAGCAAAAACTCAAGGACACCACCGGCATCGGCACCGAAGCCACTCGAGCGGGGATCATTCAGGGGCTGCTGG ACCGCGGCTATCTGACCAAACAAGGCAAGGCGTTGTGCGCCACGCCGGCAGCCTTCAGCCTGATCGACGCCGTCCCGCGC GCTATTGCCGACCCCGGCACCACGGCCATATGGGAGCAGGCACTGGACATGGTCCAGAGCGGCGAAATGAGCCTTGAAGA GTTCGTCGCCAAGCAGGCAGCGTGGATGAGCAAGCAGGTCAGCCGCTGTGTCGGCATGCGCATGACCATCAGCGGCCCGG CCAGCCCGGCAGGCGTTGCGCCGCCGTGGAAGAAAAAACGCAAGACCGCCAAGCGCGGGGCTGCGACCTCGACCAAGGCA GCGAACGCTGCCACAGGCACCGCAGCGAAAAAGCCTCGGCGCGCCGCCAAACCGACGGTCAAGGGCTGA Protein sequence : MRLFLCEKPSQAKDIAAALGATRRGDGCWVGASATVTWCIGHLLETAPPDAYDARYKRWVLEDLPIVPEKWKMLVKPRTA SQFKAVKRLLGEANELVIATDADREGEMIARELVEHCRYRGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPAPFWAIDVKLLHENQAFIAQWRAPSDAC DDQDRCLNQPLAQQAADAMRHAASARLVKLRTERMREAAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYP RSDCGYLPNSQHGEAAGIITALGKTDPALAGLLPHLDPQRRSRAWNDAKVTAHHGIIPTAAVRGVERLIGKPRAVYTLIR ARYLAQFLPNHEYDRTQADFDCAGQALRAVGKQIVEPGWKRAMPEALAPAKGREAPAPQPLPALFQGCECAVADVILKDL WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLTKQGKALCATPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQVSRCVGMRMTISGPASPAGVAPPWKKKRKTAKRGAATSTKA ANAATGTAAKKPRRAAKPTVKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 63 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 62 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-141 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-141 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-141 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-141 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-140 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 4e-108 | 41 |
