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Name : aer-2 (PSPTO_2014) Accession : NP_791837.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : aerotaxis receptor Function : - COG functional category : N : Cell motility COG ID : COG0840 EC number : - Position : 2200378 - 2201943 bp Length : 1566 bp Strand : - Note : see PMID:20190049 for expression data DNA sequence : ATGCGCAACAACCAGCCCGTCACTCAACGCGAGCGGACATTTCCTGCCGAACAGCGACTGATCTCCACCACCGACACTCG CGGCACCATCACGTACTGCAACGATGCTTTCGTCGATATCAGCGGTTACAGCGAGGCAGAACTGCTCGGTGCCGCGCACA ACACAGTGCGCCACCCGGACGTGCCGCCAGCGGTGTTCGAGCATATGTGGACCACGCTCAAGACCGGTCAGCCATGGATG GGTATCGTCAAGAACCGTTGCAAGAATGGCGACCATTACTGGGTCAACGCCTATGTGACGCCGGTGCTGGAAAACCGCCA GGTCGTGGGTTTCGAGTCGGTGCGCATCAAGCCGACCGCCGAACAGATTCGTCGGGCCGAAACACTTTACGCGCGCATCA ATAACGGCAAGAGCGCCGTACCGGGCCGTGATAAATGGCTGCCGATACTTCAGGACTGGCTGCCGTTCATTATGGTCAGC CAGTTGAGCTTTCTGATCGGCGTGTGGCTCAATTCGCAGTGGGGCTTCGCACTGGCTGCAGCGTTGTCGGTGCCGCTGGG CTTGCTGGGGCTGTCCTGGCAGCAACGCGGCACCAAACGCCTGTTGCGACTGGCCGAACAGACCACCTCCGACCCGTTGA TCGCTCAGATGTACACCGACAGCCGTGGCCCGCAAGCGCGTCTGGAGATGTCGATCCTCAGCCAGCAAGCGCGTCTGAAA ACCTGCCTGACCCGCTTGCAGGACACCGCCGAGCATTTGAACAATCAGGCCCGCCAGGCCAACTCGCTGGCCAACGCCAG CTCGACCGGGCTGGAGCGCCAGCGCGTGGAAACCGAGCAGGTCGCCGCCGCGATCAATCAGATGGCCGCAACCACCCAGG AAGTCGCCAGCCACGTCAATCGCGCCGCTGACGCCACCCAACAAGCCAACGAACTGACCCGTCGCGGCCGCGACATTGCC GGTGAAACCCGCGAAGCCATTCAGCGCCTGTCCACTTCGGTGGGTGAAACCGGCCTGACCGTGACCAGGCTGGCCAAGGA CAGCGACGAAATCGGCGGCGTGGTCGATGTGATCAAAGGCATCGCCGACCAGACCAACCTGCTGGCCCTCAACGCCGCCA TCGAAGCCGCACGTGCTGGCGAGATGGGTCGCGGGTTTGCCGTCGTGGCAGATGAAGTGCGCCAACTGGCGCAACGCACC GCCGAGTCCACCGGACAGATTCACGGTTTGATCGCCAAACTGCAGCAGACCGCCAACGACGCGGTGCAGACCATGAACAC CGGTCGTCTTCAGGCTGAAGAAGGTGTCGCGCGGGTACTGGAAGCCGATCAGGCGTTGGTGGGCATCAGCGAGGCCGTCG CCAACATCACCGACATGACCACGCAGATCGCCACCGCCACTGAAGAACAAAGCGCGGTGGCCGAAGAGATCAACCGCAAC ATCTCGACCATCGCCAGCCTGGCCGACACGACCTCAGACGAGGCCCGTCGCTCGGCAATACTGAGTGGCGAACTGACCGA TACGGCCAACTCCCAGTATTCGCTTGTGGAACGATTTAATCGCTGA Protein sequence : MRNNQPVTQRERTFPAEQRLISTTDTRGTITYCNDAFVDISGYSEAELLGAAHNTVRHPDVPPAVFEHMWTTLKTGQPWM GIVKNRCKNGDHYWVNAYVTPVLENRQVVGFESVRIKPTAEQIRRAETLYARINNGKSAVPGRDKWLPILQDWLPFIMVS QLSFLIGVWLNSQWGFALAAALSVPLGLLGLSWQQRGTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSILSQQARLK TCLTRLQDTAEHLNNQARQANSLANASSTGLERQRVETEQVAAAINQMAATTQEVASHVNRAADATQQANELTRRGRDIA GETREAIQRLSTSVGETGLTVTRLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRT AESTGQIHGLIAKLQQTANDAVQTMNTGRLQAEEGVARVLEADQALVGISEAVANITDMTTQIATATEEQSAVAEEINRN ISTIASLADTTSDEARRSAILSGELTDTANSQYSLVERFNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0512 | NP_230163.1 | methyl-accepting chemotaxis protein | Not tested | VSP-2 | Protein | 1e-73 | 42 |
