Gene Information

Name : fliP (PSPTO_1972)
Accession : NP_791795.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2157121 - 2157873 bp
Length : 753 bp
Strand : +
Note : see PMID:20190049 for expression data; similar to SP:P33133; identified by sequence similarity; putative

DNA sequence : 
ATGGGCGCCTTGCGTTTCCTGATACTGCTGATGCTGGCCGTGGTGGCACCTGCTGCGCTGGCGGCCGATCCGCTGTCGAT
ACCGGCGATCACGCTGTCCAACGGTGCCGACGGGCAGCAGGAATATTCGGTCAGTCTGCAGATTCTGCTGATCATGACTG
CGCTGAGCTTTATTCCGGCGTTTGTCATGCTGATGACCAGTTTCACCCGGATCATCATCGTCTTTTCTATTCTGCGTCAG
GCCCTTGGCTTGCAGCAGACACCGTCGAACCAGATCCTGACCGGCATGGCGCTGTTTTTGACCATGTTCATCATGGCGCC
GGTTTTTGACCGGGTGAATCAGGACGCATTACAGCCCTACCTGGCTGAAAAGCTCACGGCGCAAGACGCCGTTGCCAAGG
CGCAGGTGCCGATCAAGGATTTCATGCTGGCGCAGACCCGTACCAGCGACCTTGAGCTGTTCATGCGTTTGTCCAAACGT
ACCGATATTCCGACACCGGACGCTGCGCCGCTGACCATTCTGGTCCCGGCGTTCGTGATTTCGGAGCTCAAGACGGCGTT
TCAGATCGGCTTCATGATCTTTATTCCGTTTCTGATCATCGACCTGGTGGTAGCCAGTGTGCTGATGGCGATGGGCATGA
TGATGCTCTCGCCGCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTCGTGCTGGTGGATGGCTGGGCGCTGATTGTC
GGCACCCTGGCTGGCAGTTTTGGTGGCGTATGA

Protein sequence : 
MGALRFLILLMLAVVAPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQ
ALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKR
TDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIV
GTLAGSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-31 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-29 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-29 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-29 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-33 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-32 42
escR AAK26700.1 EscR Virulence LEE Protein 7e-33 42
escR AAL57527.1 EscR Virulence LEE Protein 7e-33 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 7e-33 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-33 42
escR CAI43889.1 EscR protein Virulence LEE Protein 7e-33 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-33 42
escR AAC31528.1 L0049 Virulence LEE Protein 6e-33 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-33 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-33 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-33 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-33 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-33 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-22 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 9e-23 41
escR AAC38369.1 EscR Virulence LEE Protein 5e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-89 85
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG2016 Protein 7e-66 62
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-59 60
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-62 60
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG0394 Protein 1e-33 43
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG0827 Protein 3e-33 42
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-33 41
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG0188 Protein 4e-34 41
fliP NP_791795.1 flagellar biosynthetic protein FliP VFG0715 Protein 3e-32 41