Gene Information

Name : PSPTO_1894 (PSPTO_1894)
Accession : NP_791717.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2071018 - 2071680 bp
Length : 663 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCCTGCTTCTTGTCGAGGATGATCGTGCGATCGGCCAAGGTATCCGCGTGGCCCTTAATACCGAAGGCTATACGCT
GGACTGGCTGGAAGACGGGCTGAGCGCGCTGCATGCCCTGCGCAGCGAACCCTTCGACCTGCTGTTGCTCGACCTCGGCC
TGCCACGCATGGACGGCTTCGACCTGCTGCGCCAGTTGCGCGCCGAAGAACTCGCCCTGCCGGTGCTGATCCTGACAGCC
CGCGACGGCACCGCCAACCGCATTGCCGGGCTGGACGCGGGGGCCGACGATTACCTGATCAAGCCGTTCGACGTCGATGA
ACTGAAGGCCCGCGTGCGTGCCCTGCTCAGGCGCAGCCAGGGGCGCGCGCAGCCGTTGCTGGAACACGCCGGCATCAGCC
TCGACCCGGCGTCGCAGCAGGTCAGTTTTCAGGGCAGCGAAGTACTGATGACGCCGATGGAATATCAACTGCTGCACCAA
CTGATGATCCGCCCCGGCAAAGTGGTGACCCGCGAGCGCCTGTCCAACACCCTGTACGGCTGGCAGGACAAGGTCGAAAG
CAACACCCTGGAAGTGCTGATTCACAACCTGCGCAAAAAACTGTCCACCGAGCTGATCCGCACCGTGCGCGGCGTCGGTT
ACCTGCTGGAGCTCAAGGCATGA

Protein sequence : 
MRLLLVEDDRAIGQGIRVALNTEGYTLDWLEDGLSALHALRSEPFDLLLLDLGLPRMDGFDLLRQLRAEELALPVLILTA
RDGTANRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQ
LMIRPGKVVTRERLSNTLYGWQDKVESNTLEVLIHNLRKKLSTELIRTVRGVGYLLELKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-33 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_1894 NP_791717.1 DNA-binding response regulator BAC0487 Protein 9e-34 48
PSPTO_1894 NP_791717.1 DNA-binding response regulator BAC0197 Protein 3e-32 42
PSPTO_1894 NP_791717.1 DNA-binding response regulator NC_002516.2.879194.p Protein 9e-25 41
PSPTO_1894 NP_791717.1 DNA-binding response regulator CP001918.1.gene5135. Protein 8e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_1894 NP_791717.1 DNA-binding response regulator VFG0473 Protein 2e-37 49
PSPTO_1894 NP_791717.1 DNA-binding response regulator VFG1390 Protein 7e-32 43
PSPTO_1894 NP_791717.1 DNA-binding response regulator VFG0596 Protein 7e-24 41