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Name : wbpM (PSPTO_1756) Accession : NP_791581.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1927805 - 1929799 bp Length : 1995 bp Strand : + Note : see PMID:20190049 for expression data DNA sequence : ATGAGCAGGTTGCGAGCTAGTTTGCTGGCCCTACCACGCCGCAAAAAGCGAATAATCCAGGTGGCTGCCGACGTTCTTCT GGTCTGGCTTGCGCTGTGGATGTCGTTTGTCGTGCGGCTGGGCATTGACGAACTGATCAATCCGCTGGAAAAGCACACTT GGCTTTTCATCAGTGCGCCGCTGGCGGCCATTCCGTTGTTCATCCGTTTTGGCATGTACCGTGCGGTCATGCGCTATTTT GGCAACGACGCACTGATTGCGATCATCAAAGCCGTCACGATGTCGTCGTTGATTCTCGGTTGTATGGTGTACGTATACAG CAATCACCAGCAACTGGTGCCACGCTCGGTCATCTTCAACTATTGGTGGCTGAGCCTGGTAATGATCGGCGGTCTGCGCC TGGCCATGCGGCAGTACTTCCTCGGTGACTGGTTTGCGGCGGCGCAACACGTACCGTTTGCCAAAAGCGATAACGGCCTG CAAAAAGTCGCCATCTACGGCGCAGGCGCGGCCGGCAACCAGTTGGTGGCTGCATTGCGTATGGGGCGTCTGATGCACCC TGTGGCATTCATTGATGATGACGAGTCGATCTCCAACCGGGTGATTTCCGGGCTGCAAGTCTACAAGCCTCGAAATATCC AGCGCATGATCGATTCCACCGGGGCTCAGGAAATACTCCTGGCCATCCCTTCGTCATCGCGCGGGCGTCGCCGGGAGATT CTGGGGTTTCTGGAAGGCTTTCCGTTGCACGTGCGAAGCGTCCCCGGTTTCATGGACCTGGCGGCTGGCCGGGTCAAGGT TGACGACCTTCAGGAAGTCGATATCGCCGACCTTCTGGGACGAGACGCAGTGCCTGCCCGGGAAAACCTGCTGGAGCATT GCATCAAGGGCAAGACGGTGCTGGTGACTGGCGCGGGCGGCTCGATCGGTTCCGAGTTGTGCCGGCAGATACTGCTTCTG CAGCCTGTCCAGTTGCTGTTGCTCGACCACAGCGAATTCAATCTTTACAGCATTCTGTCCGAGCTTGAACAGCGTTCTGC CCGTGAGTCTCTTTCGGTCAAGTTGCTGCCCATACTCGGTTCGGTGCGCAATCACCCCAAGCTGCTGTCGATCATGAAAA CCTGGAAGGTCGACACGGTCTACCATGCGGCCGCCTACAAGCACGTACCGATGGTTGAGCACAACATTGCCGAAGGTGTG ATCAATAACGTCGTCGGTACGCTCAATACCGCGCAGGCGGCGTTGCAGGCGGGGGTTTCCAACTTTGTCCTGATTTCCAC CGACAAGGCGGTCCGTCCAACCAACGTCATGGGCAGCACCAAGCGCCTTGCCGAGTTGATCCTGCAGGCACTGAGCCGCG AGACCGCGCCGGTGATCTTCGGCGACAAGGCCAACGTCTATCAGGTCAACAAGACCCGTTTCACGATGGTTCGTTTCGGC AACGTGCTTGGCTCATCGGGCTCTGTGATTCCGCTGTTTCACAAGCAGATTCAGTCGGGCGGGCCGCTGACGGTGACTCA TCCCAAGATCACCCGGTACTTCATGACCATCCCCGAGGCCGCTCAACTGGTTATTCAGGCGGGCTCGATGGGGCATGGCG GGGATGTGTTCGTTCTGGACATGGGCGAGCCAGTCAAGATTGTCGAACTGGCGGAGAAAATGATCCACCTTTCCGGCCTG GCCATCCGCTCCGAGAAAAACCCGCATGGCGATATCTCCATTGAGTTCACCGGGCTGCGTCCCGGTGAAAAGCTGTATGA AGAGCTGCTGATCGGCGACAACGTGGTCGCGACCGAACACCCAATGATCATGAGCGCCAGCGAAGACTGTCTGGCGTGGG ATGTATTGAAAGGCCGGCTGGTAAAACTGCTGGATGCCGTGGAGCGAGACGATTACAACAGCGTGCGCCAGTTGCTGCGA GAAACAGTCAGCGGTTATACACCAGAGGGTGAAATCGTTGACTGGATGTATCAGGAACGCAGCGGCGAGCCTTGA Protein sequence : MSRLRASLLALPRRKKRIIQVAADVLLVWLALWMSFVVRLGIDELINPLEKHTWLFISAPLAAIPLFIRFGMYRAVMRYF GNDALIAIIKAVTMSSLILGCMVYVYSNHQQLVPRSVIFNYWWLSLVMIGGLRLAMRQYFLGDWFAAAQHVPFAKSDNGL QKVAIYGAGAAGNQLVAALRMGRLMHPVAFIDDDESISNRVISGLQVYKPRNIQRMIDSTGAQEILLAIPSSSRGRRREI LGFLEGFPLHVRSVPGFMDLAAGRVKVDDLQEVDIADLLGRDAVPARENLLEHCIKGKTVLVTGAGGSIGSELCRQILLL QPVQLLLLDHSEFNLYSILSELEQRSARESLSVKLLPILGSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGV INNVVGTLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELILQALSRETAPVIFGDKANVYQVNKTRFTMVRFG NVLGSSGSVIPLFHKQIQSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGHGGDVFVLDMGEPVKIVELAEKMIHLSGL AIRSEKNPHGDISIEFTGLRPGEKLYEELLIGDNVVATEHPMIMSASEDCLAWDVLKGRLVKLLDAVERDDYNSVRQLLR ETVSGYTPEGEIVDWMYQERSGEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-77 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-76 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wbpM | NP_791581.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 1e-114 | 47 |
| wbpM | NP_791581.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG1300 | Protein | 3e-76 | 43 |
