Gene Information

Name : PSPTO_1638 (PSPTO_1638)
Accession : NP_791463.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1794648 - 1795316 bp
Length : 669 bp
Strand : -
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGCTGCAAGTGCGAAACGTATTCAAGCGCTACACCACGGCACAGGGGCCGCTGAATGTATTAAGGGGCGTGGACCTGCA
CCTGACACAGGGTGAAAGCCTGGCGTTGATGGGCGAATCCGGCAGTGGCAAGAGCACATTGCTGCATCTGGTCGCGGGCC
TTGATCAGGTCGATGACGGCAGCATCGAGATTGCCGGCCAACGCCTGGACCTGATGAACGAAAGCCAACTGGCTAACTGG
CGGCGCACCGAAATCGGTCTGGTGTTTCAGCAGTTCAACCTGATCGGCAGCCTTAAAATCGCCGACAATCTGGCGTTTCA
GGCTCGGCTGGCCGGGCGTTTCGATGCGCTCTGGCAGACGCACTTGATCGAACGTCTGGGGCTGGGCACGCTGCTGGATC
GTTATCCCGAGCAACTGTCCGGCGGACAACAGCAGCGGGTAGCGATAGGTCGCGCCCTCGCTTCACGGCCCAGCCTGCTG
CTGGCTGACGAGCCCACCGGCAATCTCGACGAGACCACCAGTGACGAAGTGCTGCAATTGTTGCTGGATGTGCTCGCCGA
CAGCCCCACCAGCCTGTTGATGGTCACCCACAGCCCGCGGGTCGCTGACCGACTGGCGCGCAGAGTGGTGCTGCATCTCG
GTCGTCTGGCAGTCGAAGGCGAGCGCTGA

Protein sequence : 
MLQVRNVFKRYTTAQGPLNVLRGVDLHLTQGESLALMGESGSGKSTLLHLVAGLDQVDDGSIEIAGQRLDLMNESQLANW
RRTEIGLVFQQFNLIGSLKIADNLAFQARLAGRFDALWQTHLIERLGLGTLLDRYPEQLSGGQQQRVAIGRALASRPSLL
LADEPTGNLDETTSDEVLQLLLDVLADSPTSLLMVTHSPRVADRLARRVVLHLGRLAVEGER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-27 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_1638 NP_791463.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 8e-23 45
PSPTO_1638 NP_791463.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 5e-29 43