Gene Information

Name : PSPTO_1624 (PSPTO_1624)
Accession : NP_791449.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Resistance
Product : sodium:solute symporter family protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4147
EC number : -
Position : 1780575 - 1782233 bp
Length : 1659 bp
Strand : +
Note : see PMID:20190049 for expression data

DNA sequence :
ATGATCCGGCGCCTATCAGCAGCACTTGGCCTGGCCGCATTCGCGCCGACCCTCTGGGCGGCAGATGCATTGACTGGCGC
AGTACAGAAACAACCCCTGAACGTCGCTGCGATCGTCATGTTCGTGATCTTCGTCGCGTTCACGCTGTACATCACCTACT
GGGCCTCAAAGAAGAACAAGACCGCATCGGACTATTACTCGGCGGGTGGCAAGATCACCGGCTTTCAGAATGGTCTGGCG
ATTGCTGGTGACTACATGTCGGCAGCCTCTTTTCTGGGTATTTCCGCACTGGTCTACACCTCCGGCTACGACGGCCTGAT
CTACTCGATCGGCTTCCTGGTGGGCTGGCCGATCATTCTGTTCCTGATCGCCGAGCGCCTGCGTAACCTGGGTAAATACA
CCTTTGCCGACGTAGCCTCTTATCGCCTCAAGCAAAAAGAGATTCGCACACTGTCTGCCTGTGGTTCGCTGGTGGTGGTG
GCGTTTTATCTGATTGCGCAAATGGTCGGTGCGGGCAAGCTGATCCAGTTGCTATTTGGTCTGGACTACACCGTTGCAGT
GGTGCTGGTCGGTATTCTGATGTGCCTTTACGTGCTGTTCGGCGGCATGCTGGCGACCACCTGGGTACAGATCATCAAAG
CGGTGATGCTGCTTTCCGGTGCCTCGTTCATGGCGCTGATGGTCATGAAACACGTCAACTTCGACTTCAACATGCTGTTC
TCCGAGGCGATCAAGGTTCACCCTAAAGGTGAAGCGATCATGAGCCCGGGCGGGCTGGTAAAAGACCCGATCTCGGCGTT
CTCGCTGGGTCTGGCGTTGATGTTCGGTACGGCGGGTCTGCCGCACATTCTGATGCGCTTCTTCACCGTGAGTGATGCCA
AGGAAGCCCGTAAGTCGGTGCTCTACGCCACTGGCTTTATCGGCTACTTCTACATCCTGACCTTCATCATCGGTTTTGGC
GCGATCCTGCTGGTCAGCACCAACCCGGCATTCAAGGATGCAGCGGGTGCCTTGCTGGGCGGCAACAACATGGCGGCGAT
TCACCTGGCCGATGCGGTCGGGGGCAGTCTGTTCCTGGGCTTCATTTCTGCCGTCGCCTTTGCGACCATCCTGGCGGTGG
TTGCCGGTCTGACGCTGGCCGGTGCGTCGGCGGTCTCCCATGACCTGTACGCCAGTGTGATCAAGGCGGGCAAAGCCAAC
GAGAAAGACGAAATCCGCATCTCGAAAATGACCACCATTGCACTGGCTGTCGTGGCGATCCTGTTGGGTATTGCTTTCGA
AAGTCAGAACATCGCGTTCATGGTGGGCCTGGCGTTCTCCGTCGCGGCAAGTTGCAACTTCCCGATACTGCTGCTTTCCA
TGTACTGGAAAAACCTGACCACCCGTGGCGCCATGATTGGTGGCTGGATGGGCCTGATCAGCGCTGTGGTGCTGATGGTG
CTCGGCCCGACCATCTGGGTGCAGATCCTGCACAACCCTAAAGCCATCTTCCCTTACGAATACCCGGCGCTGTTCTCTAT
CGCCATCGCATTCGTGGGTATCTGGTTCTTCTCCATCACCGACAAGTCGAAAGCGGCAGAGGGCGAACGCGCCTTGTTCT
ACCCGCAGTTCGTCCGGTCGCAGACGGGGCTGGGTGCCAGCGGTGCGGTTTCTCACTAA

Protein sequence :
MIRRLSAALGLAAFAPTLWAADALTGAVQKQPLNVAAIVMFVIFVAFTLYITYWASKKNKTASDYYSAGGKITGFQNGLA
IAGDYMSAASFLGISALVYTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKEIRTLSACGSLVVV
AFYLIAQMVGAGKLIQLLFGLDYTVAVVLVGILMCLYVLFGGMLATTWVQIIKAVMLLSGASFMALMVMKHVNFDFNMLF
SEAIKVHPKGEAIMSPGGLVKDPISAFSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVLYATGFIGYFYILTFIIGFG
AILLVSTNPAFKDAAGALLGGNNMAAIHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVIKAGKAN
EKDEIRISKMTTIALAVVAILLGIAFESQNIAFMVGLAFSVAASCNFPILLLSMYWKNLTTRGAMIGGWMGLISAVVLMV
LGPTIWVQILHNPKAIFPYEYPALFSIAIAFVGIWFFSITDKSKAAEGERALFYPQFVRSQTGLGASGAVSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK01502.1 putative amino acid transport protein Not tested PAGI-1 Protein 1e-127 59
cur_1523 YP_001800917.1 transporter Not tested Not named Protein 5e-74 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_1624 NP_791449.1 sodium:solute symporter family protein BAC0564 Protein 2e-179 78
PSPTO_1624 NP_791449.1 sodium:solute symporter family protein BAC0570 Protein 3e-137 64