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Name : lysS (PSPTO_1501) Accession : NP_791326.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1658196 - 1659698 bp Length : 1503 bp Strand : + Note : see PMID:20190049 for expression data DNA sequence : ATGAGCGACCAACAACTCGACCCGCAAGCCCTGCAACAGGAAGAAAACACCCTGATCGCCCTGCGCAAGGAAAAGCTTGC TGCCGGCCGTGCCAAGGGTCAGGCCTTCCCCAACGACTTCCGCCGCGACAGCTACTGCAATGACCTGCAGAAACAGTACG TCGACAAGACCAAGGAAGAACTGGCAGAGGCAGCGATCCCGGTCAAGGTTGCCGGTCGCATCATGCTTAACCGTGGTTCG TTCATGGTCATCCAGGACATGACCGGGCGCATCCAGGTCTATGTCAATCGCAAAACCCTGCCTGAAGAAACCCTGGCCGA GGTGAAAACCTGGGACCTGGGCGACATCATCGCGGCCGAAGGTACGCTGGCACGCTCCGGCAAGGGCGACCTGTACGTCG AAATGACCAGCGTGCGCCTGCTGACCAAGTCGCTGCGCCCGCTGCCCGACAAGCACCACGGCCTGACCGATACCGAGCAG CGCTACCGCCAGCGTTACGTTGACCTGATCGTCAACGAAGACGTGCGCGAAACCTTCCGTGTGCGCTCGCAGGTCATCGC TCACATCCGCAGCTTCCTGATGCAGCGTGACTTCCTTGAAGTTGAAACGCCGATGTTGCAGACCATTCCTGGCGGTGCGG CAGCCAAGCCGTTTGAAACCCACCACAATGCACTGGACCTGGAAATGTTCCTGCGTATTGCACCGGAGCTGTACCTCAAG CGTCTGGTGGTCGGCGGTTTCGAGAAAGTCTTCGAGATCAACCGCAACTTCCGTAACGAAGGTGTTTCGACCCGGCATAA CCCCGAGTTCACCATGCTCGAGTTCTACCAGGCCTACGCTGACTACGAAGACAACATGGACCTCACCGAAGAACTGTTCC GCGAGCTGGCGCAGCTGGTGCTGGGCAGCACCGACGTGCCTTACGGCGACAAGGTGTTCCACTTCGGCGAACCGTTCGTG CGCCTGTCGGTGTTCGATTCGATCCTCAAGTACAACCCTGAGCTGACCGCTGCCGATCTGCAGGATGTGGACAAAGCGCG CGCCATCGCCAAGAAGGCGGGTGCGAAAGTGCTCGGCTTCGAAGGATTGGGCAAACTGCAGGTGATGATTTTCGAAGAAC TGGTCGAGCACAAGCTGGAACAGCCCCACTTCATCACCCAGTACCCGTTCGAAGTGTCGCCGCTGGCCCGTCGCAACGAT GACAACCCGAACGTCACCGACCGTTTCGAGCTGTTCATCGGCGGCCGCGAGATCGCCAACGCCTACTCCGAGCTCAATGA CGCTGAAGATCAGGCCGAACGCTTCCAGGCCCAGGTGGCCGACAAGGACGCCGGTGACGACGAAGCCATGCACTACGACG CCGACTTTGTTCGTGCGCTGGAATACGGCATGCCGCCCACGGCGGGTGAGGGGATCGGTATCGACCGGTTGGTGATGCTG CTCACCGACTCGCCGTCGATCCGGGACGTGATCCTGTTCCCGCACATGCGCCCCCAGGCGTAA Protein sequence : MSDQQLDPQALQQEENTLIALRKEKLAAGRAKGQAFPNDFRRDSYCNDLQKQYVDKTKEELAEAAIPVKVAGRIMLNRGS FMVIQDMTGRIQVYVNRKTLPEETLAEVKTWDLGDIIAAEGTLARSGKGDLYVEMTSVRLLTKSLRPLPDKHHGLTDTEQ RYRQRYVDLIVNEDVRETFRVRSQVIAHIRSFLMQRDFLEVETPMLQTIPGGAAAKPFETHHNALDLEMFLRIAPELYLK RLVVGGFEKVFEINRNFRNEGVSTRHNPEFTMLEFYQAYADYEDNMDLTEELFRELAQLVLGSTDVPYGDKVFHFGEPFV RLSVFDSILKYNPELTAADLQDVDKARAIAKKAGAKVLGFEGLGKLQVMIFEELVEHKLEQPHFITQYPFEVSPLARRND DNPNVTDRFELFIGGREIANAYSELNDAEDQAERFQAQVADKDAGDDEAMHYDADFVRALEYGMPPTAGEGIGIDRLVML LTDSPSIRDVILFPHMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-134 | 60 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-77 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_791326.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-134 | 60 |
