Gene Information

Name : hrpL (PSPTO_1404)
Accession : NP_791231.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Unknown
Product : RNA polymerase sigma factor HrpL
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1542838 - 1543392 bp
Length : 555 bp
Strand : +
Note : see PMID:20190049 for expression data; similar to GP:5360281, and SP:P37929; identified by sequence similarity; putative

DNA sequence : 
ATGTTTCAGAAGATTGTGATCCTCGACTCAACCCAGCCCCGTCAGCCATCTTCGTCCGCCGGTATTCGCCAAATGACGGC
CGATCAGATTCAGATGCTCAGGGCGTTTATCCAAAAGCGGGTGATGAACCCTGATGATGTGGATGACATTCTCCAGTGCG
TGTTTCTTGAAGCCCTGCGTAACGAGCACAAGTTTCAACATGCCAGCAAACCGCAGACCTGGCTGTGTGGCATCGCGCTG
AACCTGATCCGCAATCACTTCCGCAAAATGTATCGTCAGCCGTATCAGGAAAGCTGGGAAGACGAAGTGCATTCCGAGCT
GGAAGGGCACGGTGATGTCAGTCATCAGGTAGAGGGGCATCGGCAACTGGCGCGAGTCATTCAGGCCATTGATTGCCTGC
CGTCGAACATGCAAAAAGTGCTGGAAGTGTCGCTGGAGATGGACGGCAATTATCAGGAAACAGCGAACAGCCTCGGCGTG
CCGATTGGCACCGTTCGCTCACGCCTGTCCCGCGCGCGGGTTCAGCTCAAGCAGCAAATCGACCCGTTCGCCTGA

Protein sequence : 
MFQKIVILDSTQPRQPSSSAGIRQMTADQIQMLRAFIQKRVMNPDDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIAL
NLIRNHFRKMYRQPYQESWEDEVHSELEGHGDVSHQVEGHRQLARVIQAIDCLPSNMQKVLEVSLEMDGNYQETANSLGV
PIGTVRSRLSRARVQLKQQIDPFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 4e-85 100
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 2e-84 99
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 1e-80 91
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 1e-80 91
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 5e-79 90
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 5e-79 90
hrpL AAR25629.1 RNA polymerase sigma factor HrpL Not tested Not named Protein 3e-37 54
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 9e-30 48
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 4e-28 47
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 1e-24 46