Gene Information

Name : hrcR (PSPTO_1395)
Accession : NP_791222.3
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : type III secretion protein HrcR
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1534238 - 1534840 bp
Length : 603 bp
Strand : -
Note : see PMID:20190049 for expression data; similar to GP:11276516; identified by sequence similarity; putative

DNA sequence : 
ATGTCGCTGATCCCTTTTTTGCTGATCGTCTGCACCGCGTTTCTCAAGATTGCCATGACCCTGTTGATCACCCGCAATGC
CATCGGCGTGCAGCAGGTGCCACCAAACATGGCGCTGTACGGCATCGCTCTGGCGGCGACCATGTTCGTCATGGCCCCGG
TGGCCCATGAAATGCAGCAGCGTGTGCATGACCACCCACTGGAGCTGGGCAATACCGAAAAACTGCAAGCCAGCGCCAGA
ACCGTCATCGAACCGCTGCAACGGTTCATGACCCGTAATACCGACCCGGATGTCGTCGCTCACCTGCTCGACAACACCCA
GCGCATGTGGCCCAAGGAAATGGCAGACCAGGCGAGCAAGAACGACTTGCTGCTGGCGATCCCGGCGTTCGTCCTGTCGG
AGCTGCAAGCCGGCTTCGAGATCGGTTTTCTGATCTACATCCCGTTCATCGTTATCGACCTGATTGTCTCCAACCTGCTG
CTGGCGCTGGGCATGCAGATGGTCTCGCCCATGACGCTGTCGCTGCCACTCAAGTTGCTGCTGTTTGTCATGGTGTCGGG
CTGGTCGCGTCTGCTCGACAGCCTCTTCTATTCGTATATGTGA

Protein sequence : 
MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQRVHDHPLELGNTEKLQASAR
TVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLL
LALGMQMVSPMTLSLPLKLLLFVMVSGWSRLLDSLFYSYM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 6e-86 100
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-86 100
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-82 94
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-81 93
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-81 93
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-82 93
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-66 75
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-66 75
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-66 75
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-69 75
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-67 72
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-36 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-37 46
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-31 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-31 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-31 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 8e-31 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-31 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-30 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-30 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 9e-31 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-35 42
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-36 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-36 42
escR AAC31528.1 L0049 Virulence LEE Protein 2e-36 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-36 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-36 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-36 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-36 42
escR AAC38369.1 EscR Virulence LEE Protein 2e-35 42
escR AAK26700.1 EscR Virulence LEE Protein 2e-36 42
escR AAL57527.1 EscR Virulence LEE Protein 2e-36 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-36 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-31 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-31 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-31 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-31 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-31 41
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR NP_791222.3 type III secretion protein HrcR VFG0044 Protein 3e-40 49
hrcR NP_791222.3 type III secretion protein HrcR VFG0394 Protein 6e-38 47
hrcR NP_791222.3 type III secretion protein HrcR VFG0188 Protein 8e-39 45
hrcR NP_791222.3 type III secretion protein HrcR VFG0827 Protein 8e-37 42
hrcR NP_791222.3 type III secretion protein HrcR VFG0715 Protein 8e-36 42
hrcR NP_791222.3 type III secretion protein HrcR VFG0519 Protein 7e-32 41
hrcR NP_791222.3 type III secretion protein HrcR VFG2016 Protein 5e-23 41
hrcR NP_791222.3 type III secretion protein HrcR VFG2494 Protein 3e-22 41