Gene Information

Name : hrcS (PSPTO_1394)
Accession : NP_791221.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : type III secretion protein HrcS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1533964 - 1534230 bp
Length : 267 bp
Strand : -
Note : see PMID:20190049 for expression data; similar to GP:3282782, and GP:11276517; identified by sequence similarity; putative

DNA sequence :

ATGGAAGCGTTGGCGTTGTTCAAGCAAGGCATGTTTCTGGTGGTGATCCTGACCGCTCCGCCACTGGGCGTTGCGGTGCT
GGTGGGGGTGATCACCTCGCTGTTGCAGGCACTCATGCAGATTCAGGATCAGACCCTGCCGTTCGGTATCAAACTGGCGG
CAGTGGGCATGACGCTGGCCATGACCGGTCGCTGGATCGGAGTCGAACTGATCCAGTTCATCAACATGGCTTTCGATCTT
ATCGCCCGCTCTGGAGTCGTCCACTAG

Protein sequence :

MEALALFKQGMFLVVILTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGMTLAMTGRWIGVELIQFINMAFDL
IARSGVVH

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcS	AAG33885.1	HrcS	Virulence	Hrp PAI	Protein	1e-35	100
hrcS	NP_791221.1	type III secretion protein HrcS	Virulence	Hrp PAI	Protein	2e-35	100
hrcS	AAT96201.1	HrcS	Virulence	T-PAI	Protein	3e-34	96
hrcS	AAT96147.1	HrcS	Virulence	T-PAI	Protein	3e-34	96
hrcS	ABQ88360.1	HrcS	Virulence	Hrp PAI	Protein	3e-29	95
hrpO	AAB05076.1	HrpO	Virulence	Hrp PAI	Protein	3e-29	95
hrcS	AAT96263.1	HrcS	Virulence	S-PAI	Protein	2e-24	68
hrcS	AAT96304.1	HrcS	Virulence	S-PAI	Protein	2e-24	68
hrcS	AAT96344.1	HrcS	Virulence	S-PAI	Protein	2e-24	68
hrcS	ABA47280.1	HrcS	Virulence	S-PAI	Protein	4e-24	67
hrcS	AAB06006.1	HrcS	Virulence	Hrp PAI	Protein	1e-22	65
lscS	AAO18039.1	LscS	Virulence	TTSS locus	Protein	4e-11	51
escS	YP_003232139.1	T3SS structure protein EscS	Virulence	LEE	Protein	4e-10	44
escS	AAK26701.1	EscS	Virulence	LEE	Protein	3e-10	44
escS	AAL57528.1	EscS	Virulence	LEE	Protein	3e-10	44
escS	CAC81848.1	EscS protein	Virulence	LEE II	Protein	3e-10	44
escS	YP_003223489.1	T3SS structure protein EscS	Virulence	LEE	Protein	4e-10	44
ssaS	YP_216428.1	secretion system apparatus protein SsaS	Virulence	SPI-2	Protein	2e-04	43
ssaS	NP_460385.1	type III secretion system apparatus protein	Virulence	SPI-2	Protein	2e-04	43
ssaS	CAA68200.1	secretion system apparatus, SsaS	Virulence	SPI-2	Protein	2e-04	43
ssaS	NP_456108.1	putative type III secretion protein	Virulence	SPI-2	Protein	2e-04	43
ssaS	NP_805091.1	type III secretion protein	Virulence	SPI-2	Protein	2e-04	43
escS	AAC31527.1	L0048	Virulence	LEE	Protein	7e-10	43
escS	ACU09472.1	hypothetical protein	Not tested	LEE	Protein	7e-10	43
unnamed	AAL06355.1	EscS	Virulence	LEE	Protein	3e-10	43
escS	YP_003236102.1	T3SS structure protein EscS	Virulence	LEE	Protein	1e-09	43
escS	NP_290282.1	hypothetical protein	Virulence	LEE	Protein	1e-09	43
escS	CAI43888.1	EscS protein	Virulence	LEE	Protein	7e-10	43
ECs4582	NP_312609.1	EscS	Virulence	LEE	Protein	1e-09	43
escS	AAC38370.1	EscS	Virulence	LEE	Protein	7e-10	43
spaQ	AAS66866.1	SpaQ	Not tested	SSR-2	Protein	7e-11	43
escS	AFO66341.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-09	42
escS	AFO66401.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-09	42
ysaS	AAS66847.1	YsaS	Not tested	SSR-1	Protein	4e-08	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
hrcS	NP_791221.1	type III secretion protein HrcS	VFG0395	Protein	6e-11	52
hrcS	NP_791221.1	type III secretion protein HrcS	VFG0043	Protein	3e-13	47
hrcS	NP_791221.1	type III secretion protein HrcS	VFG0187	Protein	3e-07	46
hrcS	NP_791221.1	type III secretion protein HrcS	VFG0520	Protein	7e-05	43
hrcS	NP_791221.1	type III secretion protein HrcS	VFG0826	Protein	3e-10	43
hrcS	NP_791221.1	type III secretion protein HrcS	VFG0716	Protein	3e-10	43
hrcS	NP_791221.1	type III secretion protein HrcS	VFG1772	Protein	1e-08	43
hrcS	NP_791221.1	type III secretion protein HrcS	VFG2454	Protein	2e-05	42