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Name : hrcU (PSPTO_1392) Accession : NP_791219.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : type III secretion protein HrcU Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 1532093 - 1533172 bp Length : 1080 bp Strand : - Note : see PMID:20190049 for expression data; similar to GP:3282784, GB:U09068, PID:483878, PID:563405, PID:563415, PID:563418, PID:563428, PID:563458, PID:563460, PID:563477, PID:563481, and PID:976302; identified by sequence similarity; putative DNA sequence : GTGAGCGAAAAAACAGAAAAAGCCACGCCCAAACAGATCCGCGACGCGCGGGAAAAGGGCCAGGTCGGACAAAGCCAGGA CCTCGGCAAGCTGCTGGTTCTTCTGGCTGTCAGTGAGGTCACGCTGGGCCTGGCCAATGAAAGCGTGAATCGCCTGCAGG CTTTGCTGGCGCTGACCTTCAAGGGTATTGAACGGCCTTTCATGTCGGCAGTCGAGCTGATCGCCAGCGAAGGGTTGTCC GTGGTACTGAGCTTTACCTTGTGCAGCGTGGGTCTGGCGATGCTCATGCGCTTGATCAGCAGTTGGGTGCAGATCGGCTT TCTCTTCGCGCCCAAGGCGTTGAAGCTCGATATCAAAAAGATCGACCCCTTTTCCCACGCCAAACAGATGTTTTCCGGGC AGAACATCCTCAATCTGTTGCTGAGCATCCTCAAGGCCGTGGCGATCGGAGCGACCTTGTATACCCAGGTCAAGCCGGCA TTGGGCACTCTGATCCTGTTGGCCAACAGCGATCTGGCCACTTATCTGCATGCGCTGATCGAGCTGTTTCAGCATGTGCT CAGGGTGATTCTGGGGTTGCTGCTGGTCATCGCCCTGATCGACTTTGCCATGCAGAAGTATTTCCATGCCAAGAAGCTGC GCATGAGCCACGAGGACATCAAGAAGGAATACAAACAGTCCGAGGGCGACCCGCATGTCAAGGGCCATCGCCGCCAACTG GCCCATGAAATTCTCAATCAGGAGCCAAGCGCTGCGCCGAAACCGGTGGAAGAAGCCGACATGCTGCTGGTCAACCCGAC TCACTATGCGGTGGCGCTTTACTACCGGCCTGGCGAGACGCCATTGCCGATGATTCACTGCAAGGGCGAGGACGAAGATG CCCTGGCGCTGATCGCACAGGCAAAGAAAGCGGGCATTCCGGTCGTGCAAAGCATCTGGCTGGCGCGCACGCTGTACAAG GTCAACGTCGGAAAATACATCCCCCGCCCTACCCTGCTGGCCGTCGGCCACATCTACAAAGTGGTCCGCCAGCTGGAAGA GATCACTGACGAAGTGATTCGTATCGACGACGACATGTGA Protein sequence : MSEKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLANESVNRLQALLALTFKGIERPFMSAVELIASEGLS VVLSFTLCSVGLAMLMRLISSWVQIGFLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPA LGTLILLANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQL AHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYK VNVGKYIPRPTLLAVGHIYKVVRQLEEITDEVIRIDDDM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 3e-155 | 100 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 4e-133 | 99 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 1e-148 | 88 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 1e-148 | 88 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 1e-126 | 85 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 5e-142 | 85 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 5e-142 | 85 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 1e-84 | 55 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 7e-87 | 55 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 3e-87 | 55 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 9e-86 | 54 |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-81 | 53 |
