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Name : hopAA1-1 (PSPTO_1372) Accession : NP_791199.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Virulence Product : type III effector HopAA1-1 Function : - COG functional category : - COG ID : - EC number : - Position : 1507846 - 1509306 bp Length : 1461 bp Strand : + Note : previously known as HopPtoA1 (PMID 12437299; Badel et al,2002) and CEL ORF5 (PMID 10781092; Alfano et al, 2000); see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02987 DNA sequence : ATGCACATCAACCGACGCGTCCAACAACCGCCTGTGACTGCGACGGATAGCTTTCGGACAGCGTCCGACGCGTCTCTTGC CTCCAGCTCTGTGCGATCTGTCAGCTCCGATCAGCAACGCGAGATAAATGCGATTGCCGATTACCTGACAGATCATGTGT TCGCTGCGCATAAACTGCCGCCGGCCGATTCGGCTGATGGCCAAGCTGCAGTTGACGTACACAATGCGCAGATCACTGCG CTGATCGAGACGCGCGCCAGCCGCCTGCACTTCGAAGGGGAAACCCCGGCAACCATCGCCGACACCTTCGCCAAGGCGGA AAAGCTCGACCGATTGGCGACGACTACATCAGGCGCGTTGCGGGCGACGCCCTTTGCCATGGCCTCGTTGCTTCAGTACA TGCAGCCTGCGATCAACAAGGGCGATTGGCTGCCGGCTCCGCTCAAACCGCTGACCCCGCTCATTTCCGGAGCGCTGTCG GGCGCCATGGACCAGGTGGGCACCAAGATGATGGACCGCGCGACGGGTGATCTGCATTACCTGAGCGCCTCGCCGGACAG GCTCCACGATGCGATGGCCGCTTCGGTGAAGCGCCACTCGCCAAGCCTTGCTCGACAGGTTCTGGACACGGGGGTTGCGG TTCAGACGTACTCGGCGCGCAACGCCGTACGTACCGTATTGGCTCCGGCACTGGCGTCCAGACCCGCCGTGCAGGGTGCT GTGGACCTTGGTGTATCGATGGCGGGTGGTCTGGCTGCCAACGCAGGCTTTGGCAACCGCCTGCTCAGTGTGCAGTCGCG TGATCACCAGCGTGGCGGTGCATTAGTGCTCGGTTTGAAGGATAAAGAGCCCAAGGCTCAACTGAGCGAAGAAAACGACT GGCTCGAGGCTTATAAAGCAATCAAATCGGCCAGCTACTCGGGTGCGGCGCTCAACGCTGGCAAGCGGATGGCCGGTCTG CCACTGGATATGGCGACCGACGCAATGGGTGCGGTAAGAAGCCTGGTGTCAGCGTCCAGCCTGACCCAAAACGGTCTGGC CCTGGCGGGTGGCTTTGCAGGGGTAGGCAAGTTGCAGGAGATGGCGACGAAAAATATCACCGACCCGGCGACCAAGGCCG CGGTCAGTCAGTTGACCAACCTGGCAGGTTCGGCAGCCGTTTTCGCAGGCTGGACCACGGCCGCGCTGACAACCGATCCC GCGGTGAAAAAAGCCGAGTCGTTCATACAGGACACGGTGAAATCGACTGCATCCAGTACCACAGGCTACGTAGCCGACCA GACCGTCAAACTGGCGAAGACCGTCAAAGACATGGGCGGGGAGGCGATCACCCATACCGGCGCCAGCTTGCGCAATACGG TCAATAACCTGCGTCAACGCCCGGCTCGTGAAGCTGATATAGAAGAGGGGGGCACGGCGGCTTCTCCAAGTGAAATACCG TTTCGGCCTATGCGGTCGTAA Protein sequence : MHINRRVQQPPVTATDSFRTASDASLASSSVRSVSSDQQREINAIADYLTDHVFAAHKLPPADSADGQAAVDVHNAQITA LIETRASRLHFEGETPATIADTFAKAEKLDRLATTTSGALRATPFAMASLLQYMQPAINKGDWLPAPLKPLTPLISGALS GAMDQVGTKMMDRATGDLHYLSASPDRLHDAMAASVKRHSPSLARQVLDTGVAVQTYSARNAVRTVLAPALASRPAVQGA VDLGVSMAGGLAANAGFGNRLLSVQSRDHQRGGALVLGLKDKEPKAQLSEENDWLEAYKAIKSASYSGAALNAGKRMAGL PLDMATDAMGAVRSLVSASSLTQNGLALAGGFAGVGKLQEMATKNITDPATKAAVSQLTNLAGSAAVFAGWTTAALTTDP AVKKAESFIQDTVKSTASSTTGYVADQTVKLAKTVKDMGGEAITHTGASLRNTVNNLRQRPAREADIEEGGTAASPSEIP FRPMRS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAF71504.1 | unknown | Not tested | Hrp PAI | Protein | 0.0 | 100 |
| hopAA1-1 | NP_791199.1 | type III effector HopAA1-1 | Virulence | Hrp PAI | Protein | 0.0 | 100 |
| hopPtoA2 | AAO33453.1 | Hrp-dependent outer protein A2 | Not tested | Not named | Protein | 1e-152 | 79 |
| unnamed | AAT96223.1 | HopPtoA1-like protein | Virulence | T-PAI | Protein | 1e-112 | 66 |
| unnamed | AAT96169.1 | HopPtoA1-like protein | Virulence | T-PAI | Protein | 1e-112 | 66 |
