Gene Information

Name : PSPTO_1307 (PSPTO_1307)
Accession : NP_791136.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1436744 - 1437421 bp
Length : 678 bp
Strand : -
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGCGCGTGCTGATCATCGAAGACGAAGAGAAAACCGCAGACTACCTGCGCCGTGGCCTGACCGAACAGGGCTATACGGT
GGACGTGGCCCGCGACGGCATCGAAGGCCTGCATCTGGCCTTGGAGAATGACCACGCAATCGTCATTCTCGACGTGATGC
TGCCGGGGCTCGACGGTTTTGGCGTGTTGCGTGCACTGCGCGCGCGCAAGCAAACGCCGGTGATCATGCTGACCGCTCGC
GAACAGGTCGATGACCGCATTCGCGGCCTGCGCGAAGGTGCCGACGATTACCTCGGCAAACCGTTTTCGTTTCTGGAACT
GGTCGCCCGCCTGCAGGCCCTGACCCGTCGCAGCGGGGGCCACGAACCGCTGCAGATCACCATCGCCGACCTGTGGATCG
ACCTGATCAGCCGCAAGGCAACCCGCGCCGGAGCACGACTGGACCTGACCGCCAAGGAGTTTTCGCTGCTCAGTGTGCTG
GCCCGGCGTCAGGGCGACATCCTGTCCAAAACGTCAATCGCCGAGATGGTCTGGGACATCAACTTCGACAGCGACACCAA
CGTGGTCGAAGTGGCGATCAAGCGCCTGCGCGCCAAGCTCGACGGTCCTCACGAGCACAAACTGCTGCACACCATTCGCG
GCATGGGCTACGTGCTGGAGAACCGCAGTGCGGGTTGA

Protein sequence : 
MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGFGVLRALRARKQTPVIMLTAR
EQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPLQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVL
ARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLENRSAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-54 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator BAC0197 Protein 1e-58 58
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator BAC0083 Protein 7e-56 56
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator BAC0125 Protein 2e-61 55
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator BAC0638 Protein 1e-48 53
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator BAC0111 Protein 3e-56 52
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator BAC0347 Protein 6e-51 50
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator BAC0308 Protein 7e-53 49
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator AE015929.1.gene1106. Protein 2e-32 41
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator VFG0596 Protein 3e-55 54
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator VFG1389 Protein 3e-39 48
PSPTO_1307 NP_791136.1 DNA-binding heavy metal response regulator VFG1386 Protein 8e-37 45