Gene Information

Name : algR (PSPTO_0127)
Accession : NP_789986.1
Strain : Pseudomonas syringae DC3000
Genome accession: NC_004578
Putative virulence/resistance : Virulence
Product : alginate biosynthesis regulatory protein AlgR
Function : -
COG functional category : K : Transcription
COG ID : COG3279
EC number : -
Position : 151591 - 152337 bp
Length : 747 bp
Strand : +
Note : see PMID:20190049 for expression data

DNA sequence : 
ATGAATGTCCTGATCGTTGATGACGAACCCCTGGCCCGCGAGCGATTGAGCCGCATGGTCAATGAAATCGAGGGTTATCG
AGTACTGGAAGACAGCGCTTCCAATGGCGAAGAAGCCTTGGCGCTGATCGAAAAGCACAAGCCTGACGTGGTGCTACTTG
ATATCCGTATGCCGGGTATCGACGGCCTGCAGGTGGCTGCCAAACTGTGCGAACGGGAAGCTCCGCCCGCCGTGGTCTTT
TGCACCGCCCACGACGAATTTGCCTTGGAAGCCTTTCAGGTCAGCGCGGTCGGCTATCTGGTCAAGCCTGTGCGCGCCGA
GCATCTTATCGAAGCGTTGAAAAAGGCCGAGCGACCAAACCGCGTGCAATTGGCGGCGATGACACGGCCGGCGGCAGAAA
GCGGTTCCGGGCCGCGCACGCACATCAGTGCGCGTACCCGAAAAGGTATCGAATTGATTCCGCTGGATCAGGTGATCTAC
TTCATCGCCGATCACAAGTACGTCACCCTGCGCCACGAAGGTGGTGAAGTCCTGCTGGACGAGCCGCTCAAGGCACTGGA
AGACGAGTTCGGCGACCGGTTCGTGCGTATTCACCGCAATGCGCTGGTAGCCCGAAAGCGAATCGAAAGCATGAAGCGCA
CGCCGGTGGGGCATTTCGAGCTGTTCCTCAGAGGCCTGAATGGCGATGCGCTGATCGTCAGTCGCCGCCATGTAGCGGGT
GTGCGCAAAATGATGCAGCAGCTCTAG

Protein sequence : 
MNVLIVDDEPLARERLSRMVNEIEGYRVLEDSASNGEEALALIEKHKPDVVLLDIRMPGIDGLQVAAKLCEREAPPAVVF
CTAHDEFALEAFQVSAVGYLVKPVRAEHLIEALKKAERPNRVQLAAMTRPAAESGSGPRTHISARTRKGIELIPLDQVIY
FIADHKYVTLRHEGGEVLLDEPLKALEDEFGDRFVRIHRNALVARKRIESMKRTPVGHFELFLRGLNGDALIVSRRHVAG
VRKMMQQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00326 YP_008207791.1 Response regulator of the LytR/AlgR family Not tested AbaR25 Protein 2e-52 46
BJAB0868_00330 YP_008211656.1 Response regulator of the LytR/AlgR family Not tested AbaR26 Protein 2e-52 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
algR NP_789986.1 alginate biosynthesis regulatory protein AlgR VFG0119 Protein 4e-103 83