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Name : PSPTO_1089 (PSPTO_1089) Accession : NP_790923.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : type I restriction-modification enzyme, R subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 1195573 - 1198695 bp Length : 3123 bp Strand : + Note : see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00348 DNA sequence : ATGACCGAAGACCAATTGGAACAGGAAACCCTCGGCTGGCTGGCAGAAACGGGCTACAGCCATGTCTACGGGCCGACTAT CGCCTATGACGGCGAGAGCCCGGAACGTGACAACTACCGTCAGGTGCTCCTGGTCGAGCGCTTGCGCAGCGCTATAGTCA GGCTTAACCCCAAGGTACCGCTTGCAGCACGTGAGGATGCCCTCAAGCAGGTGCAGGAACTGGGTCTGCCGGTACAGCTG TCGGCCAACCGCCTGTTTCATCGTCTGTTGGTCAGTGGCGTACCGGTGCAGTATCAAAAGGACGGTGAGACCCGTGGCGA CTTCGTGCGCTTGATCGACTGGGTCGAGGTGAAGGCCAATGACTGGCTGGCCATCAATCAGTTCAGCATCCAAGGGCCAA AACATACCCGGCGTCCAGACATCATCCTGTTCGTCAACGGCCTGCCATTGGTGCTGCTGGAGCTGAAAAACCCGGCCGAT GTAAAAGCCGACCTGGGCAAGGCCTTCGATCAGATCCAGACCTACAAGGAGCAGATCCCGGATCTGTTCCAGTACAACGA AATCCTGGTGATTTCTGACGGCAGTGAAGCGCGCATGGGCTCGTTGTCGGCTGATGTTGAACGCTTCATGAACTGGCGCA CCATCGACGGCAAAGATCTCGACCCACTGGGTCAGTTCAATGAACTGGAGACCTTGGTGCGCGGTGCTCTGGCACCGCCG ATGCTGCTCGATTACCTGCGCTACTTCGTGCTGTTTGAGGACGACGGCCGACTGGTGAAGAAGATTGCCGGCTATCACCA GTTCCACGCCGTACGCGCCGCCATTGGCCAAGTGGTCAGTGCCTCGCGTCCCGGTGGTACCCATAAAGGCGGCGTGGTCT GGCATACCCAGGGTTCGGGCAAGAGCATCACCATGACCTGCTTCGCCGCCCGGGTGATGCAGGACGCGGCAATGGAGAAC CCGACCATCGTGGTGATCACCGATCGCAACGACCTGGACGGCCAGTTGTTCGGGGTGTTCTCGCTGTCCCATGATCTGTT GCGTGAACAGCCCTTTCAGGTGGAATCGCGCGGTGACTTGCGCAGCAAACTGACCAATCGGCCGAGTGGCGGCATTGTCT TTGCCACAATCCAGAAATTCATGCCGGGTGCGGATGAGGACATCTTTCCGATCTTGTCCGACCGCTCCAATATCGTGGTC ATTGCTGACGAAGCACATCGCACCCAATACGGCTTTGGTGCTGAGTTGAAAGTCTCAGAAGCGACGGCTGACACCGCGAG CCAGACCCGTTACCAGGTCGGGTATGCCCAGCACCTGCGCGATGCACTACCGAACGCGACCTTTGTGGCTTTCACCGGCA CACCCGTCTCCAGTGAAGACCGCGACACCCGTTCGGTCTTCGGTGAATACATTCACATTTACGACATGCAGCAGGCCACC GAAGATGGCGCAACGGTCGCCATCTATTACGAATCGCGACTGGCCAAGCTGTCCTTGAAAGATAGCGAGCTACCCGCGAT TGATGATCAGTTCGATGAACTGGCCGAAGATGAAGAGGACGACCAGCAGTCACGGTTAAAAAGCCGTTGGGCCGCGCTAG AAAAAGTCGTCGGAGCCGAACCACGTATCCGCAACGTTGCAGCTGATCTGGTCAAACATTCGGAGGAGCGTAATCAGGGC CTGGTAAGCATGGGCCAGATGCCTGGCAAGGCCATGATCGTTGCCATGAGCCGGGAGATCTGCGTGCACCTGTACAACGA GATCACCGCCCTGCGCCCGGAGTGGCATGACGAAGATCCAGAAAAAGGCGCAATCAAGGTCATCATGACGGGTAGCGCCT CGGACAAGGCTTCGCTGCGTCCACACATCTACTCAGGGCAGATCAAGAGGCGCCTGGAAAAACGCTTTAAGGATCCGCTT GATCCACTCAAGCTAGTAATCGTCCGTGACATGTGGCTGACCGGCTTTGATGCTCCCTGCGTTCACACGCTGTACGTCGA CAAGCCCATGAAGGGCCATAACCTGATGCAAGCCATCGCCCGGGTCAACCGCGTATTCAAGGACAAGCAGGGCGGCCTGG TGGTGGATTACATCGGAATCGCCAATGAGCTGAAAGCTGCGCTCAAGGAGTACACCGGCAGCAAGGGCAAAGGCCGACCG ACCGTGGATGCCCACGAAGCCTATTCGGTGCTGGAGGAGAAGCTCGACGTCCTGCGCAGTCTGCTGCACGGCTTCGATTG CAGCGATTTCCTCACCGGGGGCCACAAGCTGTTGGCCGGGGCCGCTAACCATGTGTTGAGTCTGGAAGATGGCAAGAAGC GCTTTGCCGACACCGCACTGGCCATGAGCAAAGCCTTTACCTTGTGCTGCACCTTGGATGAAGCCAAGGCCGTCCGCGAG GAAGTGGCGTTCTTCCAGGCAATCAAGGTGATCTTGATCAAGCGTGAAGTCAGCCAGCAGAAAAAGACCGACGAAGAACG CGAGCTAGTCATCCGCCAGATCATCGGCAATGCCGTGGTCTCTGGCGACGTGGTGGACATTTTTCAGGCCGTGGGCCTGG ATAAACCAAATATCGGCCTACTCGACGATACGTTTCTCGCCGAGGTGCGGAATCTTCCCGAGAAGAATCTGGCAGTGGAG CTGCTGGAGCGTTTGCTCGAAGATGAGATCAAGAGCCATTACAGCACCAATCTGGCCCAGGAGAAGAAGTTCTCCGAGCT ACTGGTCAATGTGATCAAACGCTATCAAAACCGCTCGATTGAAACCGCCCAGGTCATCGAAGAACTGATCGGAATGGCCA AGAAGTTCGCAGCCGCCAGTCAGCGTGGCGATGCGTTGGGGCTCAACGATGACGAACTGGCGTTTTACGATGCCTTGGCC AACAACGAAGCATCGGTACGCGAACTGGGCCACGAGATCCTGGCCAAAATTGCCCACGAGCTGACGGCCAGTCTGCGGGC CAACGTCAGTGTGGACTGGAACAGCCGCGAAAGTGTGAGGGCCAAACTGCGCATCCTGGTGCGACGCATCTTGCGCAAAT ACAAGTACCCGCCGGATCACGCGGAGGAAGCGGCTCAGCTCATCCTCAATCAGGCGGAAACTCTTTGTGAGGCATGGTTG TAG Protein sequence : MTEDQLEQETLGWLAETGYSHVYGPTIAYDGESPERDNYRQVLLVERLRSAIVRLNPKVPLAAREDALKQVQELGLPVQL SANRLFHRLLVSGVPVQYQKDGETRGDFVRLIDWVEVKANDWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPAD VKADLGKAFDQIQTYKEQIPDLFQYNEILVISDGSEARMGSLSADVERFMNWRTIDGKDLDPLGQFNELETLVRGALAPP MLLDYLRYFVLFEDDGRLVKKIAGYHQFHAVRAAIGQVVSASRPGGTHKGGVVWHTQGSGKSITMTCFAARVMQDAAMEN PTIVVITDRNDLDGQLFGVFSLSHDLLREQPFQVESRGDLRSKLTNRPSGGIVFATIQKFMPGADEDIFPILSDRSNIVV IADEAHRTQYGFGAELKVSEATADTASQTRYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRSVFGEYIHIYDMQQAT EDGATVAIYYESRLAKLSLKDSELPAIDDQFDELAEDEEDDQQSRLKSRWAALEKVVGAEPRIRNVAADLVKHSEERNQG LVSMGQMPGKAMIVAMSREICVHLYNEITALRPEWHDEDPEKGAIKVIMTGSASDKASLRPHIYSGQIKRRLEKRFKDPL DPLKLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALKEYTGSKGKGRP TVDAHEAYSVLEEKLDVLRSLLHGFDCSDFLTGGHKLLAGAANHVLSLEDGKKRFADTALAMSKAFTLCCTLDEAKAVRE EVAFFQAIKVILIKREVSQQKKTDEERELVIRQIIGNAVVSGDVVDIFQAVGLDKPNIGLLDDTFLAEVRNLPEKNLAVE LLERLLEDEIKSHYSTNLAQEKKFSELLVNVIKRYQNRSIETAQVIEELIGMAKKFAAASQRGDALGLNDDELAFYDALA NNEASVRELGHEILAKIAHELTASLRANVSVDWNSRESVRAKLRILVRRILRKYKYPPDHAEEAAQLILNQAETLCEAWL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 57 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
