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Name : hsdM (PSPTO_1086) Accession : NP_790920.1 Strain : Pseudomonas syringae DC3000 Genome accession: NC_004578 Putative virulence/resistance : Unknown Product : type I restriction-modification system, M subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 1191539 - 1193269 bp Length : 1731 bp Strand : + Note : see PMID:20190049 for expression data; similar to GP:1679866; identified by sequence similarity; putative DNA sequence : ATGACGGATCAGAAGGGCGAACAGGCCATCAACAGCCTCGCCGAGCAGGCACTCAATGAAGCCCGGGCGCGTTTTTCTCC AAACGAAAGCGGTGCCGAGCCAGAATTCGAGCCACTGAAGAAAAAGCCCGGGCGCAAAGCGGCTGTGACTGCCACCAGCA GTACCCTGCAAGACCTGGAAAAGACCCTGTGGGCCACCGCCGATAAGATGCGGGCCAACATGGATCCCGCAGAGTACAAG CACATCGTGCTTGGTCTGATCTTCCTCAAGTACATCTCCGACAGCTTTGCTGGCCGCCGCGCGGAACTGGAACGCAAATT TTCCGATGCTGGCGACGATTATTACTTGGGCGGTGACGATCCGACGTATCTGGCCTCAGAGCTCGAAGAGCGTGACTATT ACAAAGAAGTGAATGTGTTCTGGGTACCGGAGCCGGCGCGATGGGAGTCGCTACGTGCAGCCGCTAAACAGGTTGACATC GGCAAGCGTATTGATGACGCCCTGGCCGATATCGAAGCGGAAAACCCCCAGCTAAAGAACATTCTCGACAAGCGTTATGC CCGCGCCCAGTTGCCGGATGGCAAGCTTGGCGAACTGGTCGATATGATTTCCATCATTGGGTTTAGCAGCGACGCAAACA AAGCTCGTGACCTGCTGGGCCAAGTCTATGAATACTTCCTCGGCCAGTTCGCCAGTGCCGAAGGCAAGCGTGGCGGACAG TTCTACACCCCGGCGAGCATCGTCAAGACCCTGGTGGCTGTGCTCAACCCGCACCATGGCAAGGTCTACGACCCCTGCTG CGGCTCCGGCGGCATGTTTGTCCAGTCAGAAAAATTCATCGAAGCCCACGGCGGCAAGCTGGGAGATGTTTCCATCTACG GTCAGGAATCCAACCCGACCACCTGGCGCTTGGCGGCGATGAACCTGGCCATTCGTGGCATGGATTTCAACCTGGGCAAG GAACCGGCCGACAGCTTTATCCGCAATCAGCACAGCGATCTGCGGGCCGACTTCGTCTTGGCCAATCCACCGTTCAACAT CAGCGACTGGTGGCACGGCAGCCTCGACGGCGATTCACGTTGGGTCTATGGCACGCCGCCACAAGGCAATGCCAACTACG CCTGGCTGCAGCACATGCTGTTTCACCTCAAATCCAGCGGTCGCGCTGGCATCGTCCTGGCGAACGGCTCGATGAGCTCC AGCCAGAACAGCGAAGGTGACATCCGCCGCGCCATGGTCGAGGCCGACGTGGTCGAAGTGATGGTCGCCCTGCCCGGCCA ACTGTTTTTCAACACGCAAATCCCGGCCTGCCTGTGGTTTTTGGCCAAGCAAAAAAACAAACGTCCTGGCGAAGTGCTGT TTATCGACGCGCGCAAGCTCGGCACCAACATTAGTCGGGTGCAGATCGAACTGCTGGATAGCGACATCGAAAGCATCGCG CAGACCGTTGCTAACTGGCGCGGGGTGCCACTGGAGGTCGACGGCGAGATCGCCGAATACGCTGACGTTGCCGGTTTCTG CCGCAGTGTGCCTCTGGCGGAAATCGCCGAGCATGGTCATGTGCTGACCCCAGGGCGTTATGTCGGGGCCGAGGCCGTCG AGGATGACGACGAAGCCTTTGCCGACAAAATGCAGGACCTTACTGCGCTCTTGGGTGAACAGCTGGCCAAGGGCACTGAG CTCGATCAGTTGATCCGCCACAAGCTGGGGGGGCTGGGTTATGAGTTCTGA Protein sequence : MTDQKGEQAINSLAEQALNEARARFSPNESGAEPEFEPLKKKPGRKAAVTATSSTLQDLEKTLWATADKMRANMDPAEYK HIVLGLIFLKYISDSFAGRRAELERKFSDAGDDYYLGGDDPTYLASELEERDYYKEVNVFWVPEPARWESLRAAAKQVDI GKRIDDALADIEAENPQLKNILDKRYARAQLPDGKLGELVDMISIIGFSSDANKARDLLGQVYEYFLGQFASAEGKRGGQ FYTPASIVKTLVAVLNPHHGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQESNPTTWRLAAMNLAIRGMDFNLGK EPADSFIRNQHSDLRADFVLANPPFNISDWWHGSLDGDSRWVYGTPPQGNANYAWLQHMLFHLKSSGRAGIVLANGSMSS SQNSEGDIRRAMVEADVVEVMVALPGQLFFNTQIPACLWFLAKQKNKRPGEVLFIDARKLGTNISRVQIELLDSDIESIA QTVANWRGVPLEVDGEIAEYADVAGFCRSVPLAEIAEHGHVLTPGRYVGAEAVEDDDEAFADKMQDLTALLGEQLAKGTE LDQLIRHKLGGLGYEF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 3e-123 | 51 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 9e-124 | 51 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 5e-122 | 50 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 4e-119 | 50 |
