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Name : serS (TWT726) Accession : NP_787854.1 Strain : Tropheryma whipplei Twist Genome accession: NC_004572 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 837067 - 838320 bp Length : 1254 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : GTGATTGACCCAGAAATATTGGTAAATACCCCAGATATCGTCAGGCTTTCGCAGAAAAAGCGTGGGGAAAGCCAGTCTAT TGTTGAAGATGCACTTATAGCAAGGCGTAATCTACGCACAGCAATAAATAACTTCGAGACCTTGCGGGCAGAGCAAAACG TTCTTAGCAAAAAAATCGCTGGCTCAGAAGATAGCGATAGGCCTGAACTTATGAGAGTGGCAAATCTGTTGGCCGAGCGT GTTAAAAACGCTCGCGAAGAGCAGGAAAAGGCAAATAGTGAGTGGAAAAAATTATTATTTGAGATACCAAATATAGTCTC ATCAGAAGCCCCGTACGGTGTGGAAGATAAATGCGCAGTTATGAAAACTGTTGGTGATATTCCAGAGTTTGACTTTGAAC CGGCAGACCATCTACAGCTCGGAGAGCAGCTGGATGCAATCGACGTGTCAAGAGGGGTAAAGGTTTCGGGTACTCGCTTC TATTTTCTGAAAGGATGGGGCGCCCGGCTTGAGCTTGCGGTTATGAATTTGGCGCTCGATCTGGCGCTTAAGTCTGGACT TACATTGCTTATAACACCAACGCTTGTAAAACCAGAAATAATGCTGGGAACCGGGTTTCTAGGTCGACATGAGGGTGAGG TGTATCGACTGCCAAGCGGGTATTATCTGACCGGAACCAGCGAAGTTGCCATTGCGGGATATCATAGCGATGAGATATTG GATATCTCCTCTGGGCCAATACGATATGCTGGATGGTCCTCTTGTTACAGGAGAGAGGCGGGGTCTCACGGGCGGGACAC ACGTGGAATTATGCGTGTGCATCAATTTTCCAAACTGGAGATGTTTAGCTATGTTCATCCGCAGCAATCAACCAGAGAAC TCGAGCACATTGTCTCAATGCAAGAAAAGATGCTAAATCTACTCGAAATTCCGTACCGTGTTTCTGATATTGCTGCAGAG GAATTGGGGACAAGCGCTTCTAGAAAGTATGATCTAGAGGCATGGATACCCAGTCAAAATACATGGCGAGAGGTAACCAG TGCGAGTGACTGTACAACCTTTCAGGCGCGCAGACTGAATGTGAGATATCGAGACGAGTCAGGAAGGACAGGGTATGTTG CAACTCTTAATGGGACTCTTGCAACTACAAGATTCCTAGTTGCCATTCTGGAAAATCATCAGACTTCCAATGGGAGTATC AGGGTGCCAGAAGCCCTTAGACCTCTCCTGGGTCAGGATGTAATAGAGAGATAG Protein sequence : MIDPEILVNTPDIVRLSQKKRGESQSIVEDALIARRNLRTAINNFETLRAEQNVLSKKIAGSEDSDRPELMRVANLLAER VKNAREEQEKANSEWKKLLFEIPNIVSSEAPYGVEDKCAVMKTVGDIPEFDFEPADHLQLGEQLDAIDVSRGVKVSGTRF YFLKGWGARLELAVMNLALDLALKSGLTLLITPTLVKPEIMLGTGFLGRHEGEVYRLPSGYYLTGTSEVAIAGYHSDEIL DISSGPIRYAGWSSCYRREAGSHGRDTRGIMRVHQFSKLEMFSYVHPQQSTRELEHIVSMQEKMLNLLEIPYRVSDIAAE ELGTSASRKYDLEAWIPSQNTWREVTSASDCTTFQARRLNVRYRDESGRTGYVATLNGTLATTRFLVAILENHQTSNGSI RVPEALRPLLGQDVIER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-61 | 42 |
