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Name : clpC (TWT065) Accession : NP_787193.1 Strain : Tropheryma whipplei Twist Genome accession: NC_004572 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 67303 - 69825 bp Length : 2523 bp Strand : + Note : - DNA sequence : TTGGGTGAGGATATGTTTGAAAGGTTTACAGATAAAGCCCGCCGGGTTATAGTACTGGCGCAGGAGGAAGCGCGCACGCT TAGCCACAATTACATTGGCACCGAGCATGTTCTTCTTGGCCTTATTAGCGAGGGTGATGGTATTGCCGCCCAGGCGCTTG AGAGTCTTGATATTACCCTTGAGCGTGCGCGCGAGGGCGTGGCGGAACTAATAGGTCGGGGTCAGAACGCAACATCCGGG CATATCCCGTTTACGCCTCGTGCGAAAAAGGTTCTAGAGCTTTCGCTCCGCGAGGCTCTTCAGCTTGGTCACAATTACAT TGGCACTGAGCATATACTCCTTGGGATTCTTCATGAGGGTGAGGGTATCGCTGCACAGGTACTGGTGAATATGGGGGCTG AACTGCCTGCAATTCAGCAGAGGGTTATGCACCTTTTAGAAGATGGAAGAGAACAAGAGCCCGTTTCGGTTGGCCCATCT GAGTCAGGAAAAATTTCAGGCAGTCAGATACTTGATCAATTCGGGCGACACCTCACGCGTGCCGCGAAAGAGGGCAAGCT GGACCCAGTTATTGGCCGTGAGAAGGAAATAGAGCGCGTGATGCAGGTGCTCTCGCGCAGAACGAAGAATAACCCAATCC TAATCGGTGAGCCCGGTGTTGGAAAAACTGCTGTCGTCGAGGCTTTGGCTCAAGCGATAGTCAATGGTGATGTTCCGGTC AATTTGCGCAACAAGCAAGTGTACTCGCTTGATTTGGGTTCTCTTATCGCTGGTAGCAGGTACAGGGGTGATTTTGAGGA ACGCCTCAAGAAGGTTACGAAGGAAATACGTTCACGAGGGGACATTATCGTTTTTATAGATGAGATCCATTCCCTTGTTG GGGCCGGGTCTGCTGAGGGTGCTATCGATGCAGCAACTATCCTGAAACCCCTTCTGGCCCGTGGTGAGCTTCAAACAATT GGCGCAACAACCCTTGATGAGTATCGCAAGAATATTGAAAAGGATTCTGCTCTGGAAAGGCGCTTCCAGCCCGTCAACGT GTCAGAGCCCAGCATACCAATGTGTATCCAGATACTGAAAGGGTTGCGTGATCGCTATGAGGCCCATCATAAGGTGAAAA TCACCGATGAGGCAATTTATGCTGCAGTTACCCTTTCGAGTCGTTATATAAATGATAGGTTTTTACCAGACAAAGCCATA GACTTGATTGATGAGGCCGGCGCCAGGCTGAGACTGTCTGTTTTGTCTAATCCGAGCCAACTGCGCGCTGTCGAGAAAAA AATTCTCGCTGTTGTTGCCAGGAAAGACAAGGCGGTTGAAAAACAGGATTTCGATAAAGTTGGCGAGCTAAAACGGAAAG AAAAGGCCCTAAGAGCTGAGTTACGGAAGATAAAGCGTGACTATGAGAATGGCAATATTGCAAGTGCCGGCACTGTAGAT GAGGGCTTGATCGCTGAAGTGCTTGCGTCAGCGACTGGGGTTCCCGTTTTTCGACTAACCGAAGACGAGTCCGTGCGTCT GATGATGATGGAAAGAAGTTTGCATCAGCGTGTGATTGGTCAGGACGAGGCGATTTCGTCTCTGTCAAGGGCGATGCGCC GAACGCGCGCTGGATTGAAGGATCCAAACCGACCTTCCGGATCGTTTATTTTTGCCGGCCCGACCGGTGTCGGAAAAACC GAGCTGGCCAAGGCTCTTGCCGAGTTTCTGTTTGATAATGAAGACGCCCTTGTAAGTCTTGACATGTCAGAGTACGGAGA GCGGCACACTGTATCCAGGCTTTTTGGAGCCCCGCCCGGATTTGTTGGTTTCGAAGAAGGCGGACAACTGACAGAGAAAA TACGCCGCAAGCCCTTTAGCGTTGTTTTATTTGATGAAATTGAAAAAGCCCATCCGGATGTTTTTAACTCGCTTTTGCAG ATTTTGGAAGAAGGTCGTCTGAGTGACGCCCAGGGCCGTATGGTTGATTTTAGAAATACGATAATTGTTATGACAACTAA CCTTGGCAGTCGCGATATAGCATCAGGCCCTGTCGGGTTTCAGTCGGGTGATGGTAGTTTTTTGGCCTATGAGGCTATGA AGGCCAAGGTTAATGAGGAACTGAGGCGCAGTTTAAAGCCGGAGTTTCTCAATCGTATTGATGAAGTTATAGTTTTCCCG CCCCTCAATAGAGACGAGCTTCTGCAAATACTGAAGATTTTTATCAAAAAGCTCGATGACCGTTTGCGCGATAGGACCAT GCGTCTTTCTGTGACAGATGCTGCCCTAGAACAGTTGGTGCAAATTGGCTACGAACCCACCATGGGAGCAAGGCCCTTGC GCCGAGCGGTTCAGCGCGAGGTTGAGGATAGGATTTCTGAAAAGATTCTGCTGGGCGAGATAAAGCCAAATCAAGAGATA GAAATGGACTTTGTGAATGATAATTTCACGATTGTATCAAGGGATATGGATTACCCCCTATCTCCTCTTGTGCCGTCAGT GACAACGGGTCTCGTTACTCCGGATCTTGCAAGTCACGTCTAG Protein sequence : MGEDMFERFTDKARRVIVLAQEEARTLSHNYIGTEHVLLGLISEGDGIAAQALESLDITLERAREGVAELIGRGQNATSG HIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGILHEGEGIAAQVLVNMGAELPAIQQRVMHLLEDGREQEPVSVGPS ESGKISGSQILDQFGRHLTRAAKEGKLDPVIGREKEIERVMQVLSRRTKNNPILIGEPGVGKTAVVEALAQAIVNGDVPV NLRNKQVYSLDLGSLIAGSRYRGDFEERLKKVTKEIRSRGDIIVFIDEIHSLVGAGSAEGAIDAATILKPLLARGELQTI GATTLDEYRKNIEKDSALERRFQPVNVSEPSIPMCIQILKGLRDRYEAHHKVKITDEAIYAAVTLSSRYINDRFLPDKAI DLIDEAGARLRLSVLSNPSQLRAVEKKILAVVARKDKAVEKQDFDKVGELKRKEKALRAELRKIKRDYENGNIASAGTVD EGLIAEVLASATGVPVFRLTEDESVRLMMMERSLHQRVIGQDEAISSLSRAMRRTRAGLKDPNRPSGSFIFAGPTGVGKT ELAKALAEFLFDNEDALVSLDMSEYGERHTVSRLFGAPPGFVGFEEGGQLTEKIRRKPFSVVLFDEIEKAHPDVFNSLLQ ILEEGRLSDAQGRMVDFRNTIIVMTTNLGSRDIASGPVGFQSGDGSFLAYEAMKAKVNEELRRSLKPEFLNRIDEVIVFP PLNRDELLQILKIFIKKLDDRLRDRTMRLSVTDAALEQLVQIGYEPTMGARPLRRAVQREVEDRISEKILLGEIKPNQEI EMDFVNDNFTIVSRDMDYPLSPLVPSVTTGLVTPDLASHV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_787193.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 55 |
| clpC | NP_787193.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 4e-150 | 49 |
| clpC | NP_787193.1 | ATP-dependent Clp protease ATP-binding subunit | VFG2084 | Protein | 9e-95 | 42 |
