Gene Information

Name : fepD (TWT060)
Accession : NP_787188.1
Strain : Tropheryma whipplei Twist
Genome accession: NC_004572
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 60866 - 61831 bp
Length : 966 bp
Strand : -
Note : -

DNA sequence : 
GTGGCAGGGCCAGTTTTTCGTTTGAGTTTAGTATTCGGCAGCGTCGTTATTGTCGGGCTTTGTTATTTGGCCCTTTTTCT
CGATGGCTCAAGCGTCGGTCAATTGATTGACGCGGTGTTCGGGGGTGGAGACGACTTCAAAGATGTAGTCCTGCGAGATT
TTAGAGTTCCTCGTATCTTGCTGGCAATTCTTGTTGGGGCAGCACTCTCAGTTGCTGGCGCAATTATGCAAGTGGTTACC
CGGAATCCATTGGCCGATCCGGGGCTGCTTGGAATAACTCATGGGGCATATCTTGCGATTGTCCTTGGGTTTTTGGTTGG
CTATGTAACGCCTTTCTGGAATTTGCTGATCGTTCCTCTGTTGGGTGCCTCAATTGCTGCTGGGCTTGTTTATTTTATTG
GGAATATTGTCACTCCGGGGCAATTGATCTTGGTCGGAGTTGCATTAACCGCGCTGATTAGCGGACTGGCACGTTCGGTG
GCGTTAATAAATCAGGATATTTTTGACGTGATCCGCCACTGGGCAGTTGGGTCACTCGATTACAAAAAAATCGACACGGT
GTACATATCATTTCCTCTCATCCTGGCCGGAATACTAATCGCACTTATGATGATGAGCTCACTGAATGTTTTGTCAATTG
ATAAAGACATATCAAAATCGCTTGGCGTTGGAAAAACTGCACTGTGGTCATATATTGCAGTTATAGCGCTTAGCGCAGGA
TCTACCGCGGCAGTCGGTCCGATTAGTTTCTTGGCGCTTGCAGCGGCACATATCTCCCGGGTTATATCAGGACCCAATTT
GCTCAGAATTATTCCTCTTTGTTTGATAACTGGCCCGATTGTGTTACTGACTGCAGACACGCTTGGTCGGGTTCTAACAC
CAACCGGACTAGACGCTGGAGTGGTTGTGCCTTTCTTGGGTGCGCCCATTCTGATTTTCCTGTCAAGAAAGGTAAAAGTC
TTTTGA

Protein sequence : 
MAGPVFRLSLVFGSVVIVGLCYLALFLDGSSVGQLIDAVFGGGDDFKDVVLRDFRVPRILLAILVGAALSVAGAIMQVVT
RNPLADPGLLGITHGAYLAIVLGFLVGYVTPFWNLLIVPLLGASIAAGLVYFIGNIVTPGQLILVGVALTALISGLARSV
ALINQDIFDVIRHWAVGSLDYKKIDTVYISFPLILAGILIALMMMSSLNVLSIDKDISKSLGVGKTALWSYIAVIALSAG
STAAVGPISFLALAAAHISRVISGPNLLRIIPLCLITGPIVLLTADTLGRVLTPTGLDAGVVVPFLGAPILIFLSRKVKV
F

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 7e-27 41
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 7e-27 41
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 7e-27 41
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 7e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepD NP_787188.1 iron ABC transporter permease VFG0926 Protein 3e-29 42