Gene Information

Name : fepC (TWT058)
Accession : NP_787186.1
Strain : Tropheryma whipplei Twist
Genome accession: NC_004572
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 59057 - 59890 bp
Length : 834 bp
Strand : -
Note : -

DNA sequence : 
TTGTATTTGGCGGGGCGTATCTGCTTTATCTATCTATCAGGGGAGCAAATGATTACCGTCGATAAGCTTTCGTTTTCTTA
CGGAAAAAACAAGGTTCTGCACGACATAAGCATAGAGATAAAACGGGGCTCTTTTATCGCAATTATTGGCGCTAATGGCT
GTGGCAAATCAACTTTTTTACGCTCTATTGCCGGACTAAATAGATTTGAAGGGGATATTCTCCTTGACAAGCAGCATATT
CGAAGGTTAAAGCCTAAGAATTTGGCCAAGCATATCGCTTTCCTACCTCAACAGGTTAATCTCCCGGAAGGGCTAACCAT
AGCGGATCTTGTGAGCAGGGGGCGATATCCCCATCAAAGCATTCTGCATAGATGGACGAAAACTGATGAAGAAGTTGTAA
AAGAGTCCCTTCAAGCGGTTCAGGCCTCACATATTTCACAACGAGCCATTGAAGCCGTTTCGGGCGGACAGCGCCAGAGG
GCCTTGATAGCAATGGTATTAGCTCAGCAGACTCGTATTCTCTTACTCGACGAACCAACGACGTTTCTTGATATAGCTTA
TCAATATGAGATTCTTGAACTTTTAGCATCTCTCAACAGAGAAAGCAAAACTATCATTTGCTCATTACACGACCTTAACC
AAGCTGCAAGATATGCATCTCACCTGTTTGTGATGGGAGAAGGCCGGATCATTGCCTCGGGCGAACCAAAAAAAGTTATA
ACAGAAAACTTGATAGAAAATGCATTTGGCTTGAAATCAAGAATAATAGATGATCCTGAATCTAATACACCCATGATTAT
TCCCCGCAAATCTGAGAATTTGAAACGATTGTAA

Protein sequence : 
MYLAGRICFIYLSGEQMITVDKLSFSYGKNKVLHDISIEIKRGSFIAIIGANGCGKSTFLRSIAGLNRFEGDILLDKQHI
RRLKPKNLAKHIAFLPQQVNLPEGLTIADLVSRGRYPHQSILHRWTKTDEEVVKESLQAVQASHISQRAIEAVSGGQRQR
ALIAMVLAQQTRILLLDEPTTFLDIAYQYEILELLASLNRESKTIICSLHDLNQAARYASHLFVMGEGRIIASGEPKKVI
TENLIENAFGLKSRIIDDPESNTPMIIPRKSENLKRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-54 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-54 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-53 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-53 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-53 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-53 46
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-48 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-46 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepC NP_787186.1 iron ABC transporter ATP-binding protein BAC0164 Protein 7e-47 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepC NP_787186.1 iron ABC transporter ATP-binding protein VFG0925 Protein 2e-63 50
fepC NP_787186.1 iron ABC transporter ATP-binding protein VFG1042 Protein 6e-47 42