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Name : clpC (lp_1019) Accession : YP_004888949.1 Strain : Lactobacillus plantarum WCFS1 Genome accession: NC_004567 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpC Function : - COG functional category : - COG ID : - EC number : - Position : 936430 - 938943 bp Length : 2514 bp Strand : + Note : - DNA sequence : ATGGATAACTTATTTACACCTAGTGCCAAAAGTGTGCTGGTACTGGCACAGGAACAGGCCAAATATTTCAAGCATCAGGC AGTTGGTACGGAGCATTTGCTATTAGCATTGGCCATCGAAAAGAATGGAATTGCTAATAAGGTGCTACAACAATATGCCG TTAGTGAAGATGACATTCGTGAAGAAATCGAACGGTTCACTGGCTATGGGACGTTGAGCAATGTTGGCAAGGATACCTAC TTGCCATATTCACCAAAGGCCAAAGAAATTTTGTCCGTTGCCGGTGATGAAGCAAAACGGCTCGGTGCCAACAAGATTGG AACGGAACATTTGTTGTTAGCGATGCTCTCTGATGAAAGTATCCTTTCCTCGCGAATTTTAATGAATTTAAACTTAGATC TAGGTCAGACGCGTAAAGTCGTTCTTCGCAAGCTAGGTGTCAGTGACGCCATGAGTAAGCGCAAGGGTAACGCGGCTAAT CGCGGTGGCAAGAAGACTGAAGGAACGCCAACCTTGGATTCTCTGGCGCGCGATTTGACCCAATTAGCCAGTGAACAGGA AATGGACCCGGTAGTAGGTCGTTCCAAGGAAGTCAAACGGGTCATTCAGATTTTGTCACGGCGGACGAAGAATAATCCGG TCTTGATTGGTGAACCAGGGGTTGGGAAGACTGCAATCGCCGAAGGTCTAGCCCAAAAGATCGTGGCCGGTGATGTGCCA ACTGATATGGCAGATAAGCGCTTGATGATGCTCGATATGGGATCATTAGTCGCTGGGACAAAGTATCGTGGTGAATTCGA AGACCGCCTGAAAAAAGTGATTGATGAAATTTACAACGATGGCCATGTGATCTTATTTATCGATGAATTGCATACCTTGA TTGGTGCCGGTGGTGCTGAAGGGGCTATTGATGCTTCTAATATTCTGAAACCCGCACTTGCACGAGGGGAACTCCAAACG ATTGGGGCAACCACTTTAAATGAATATCAAAAGTACATTGAATCTGACGCTGCGTTGGAACGGCGTTTTGCAACGGTCAT GGTCAATGAACCGACCGAAGATGAAGCCGTTGAAATCTTAGATGGACTACGGCCACGCTATGAAGAACATCATCGGGTTA CGATTACGGATGAAGCTGTTGATCAAGCAGTCAAGCTATCCAGCCGGTATATCAGTGATCGTTTCTTGCCTGATAAGGCC ATTGACTTGATGGATGAGGCGGCAGCCAAAGTTCGCATCGATCAGATGGATCAACCAACGAAGTTATCCAAGAACCAGGA CAAGTTAGCACAACTGCGTGAGGATAAAGAAACAGCGATCGAAGCACAAGATTTTGAACAGGCCGCTGATATTCGTAAGC AGGAGATGCAACTGAAGCAACGCCTAGATCGAATCGAAGCTGACCAAGACGCTGAAGTGACTGAGGGGGCAACACCACAC TATGATTTACAAGTCACAGGTGAGGATATTGCTCAGGTCGTTGCCGAATGGACCGGGGTTCCGTTAACGCAATTGCAAAA ATCTGAAAGTGAACGCTTAGTTAACTTGGAAAAGATTTTGCATGAACGGGTTGTTGGACAGCCAGAAGCCGTATCCGCAG TGGCTCGTGCTATTCGCCGTGCGCGCAGCGGGTTGAAAGATCCGAGTCGGCCAATTGGTTCCTTTATGTTCTTAGGACCA ACTGGGGTTGGTAAGACGGAGCTAGCAAAAGCCTTGGCAGCAGCGATGTTCGGGTCTGAAGATAATATGATTCGGATCGA CATGTCTGAATACATGGAACGCTATTCGACTAGTCGTTTGATTGGCTCGGCACCTGGTTACGTTGGTTATGACGAGGGTG GTCAGCTGACAGAGAAGGTTCGCCAGAAACCATACTCGGTCGTGCTATTTGATGAAGTTGAAAAAGCTCATCCGGACGTT TTTAACATTTTGTTACAAGTTTTGGATGACGGCTACTTGACGGATTCTAAGGGTCGGAAGGTAGACTTCAGAAATACGAT TCTGATTATGACGTCGAACCTTGGGGCAACCACACTTCGTGATGAAAAATCAGTTGGTTTTGGTGCAACTGATAAGGCCA ATGACTACAATGCGGTTGCTGCGACGATTCGAGCAACGTTAAAACAGACGTTCCGCCCAGAATTCTTAAACCGGATCGAC GAAACAATCGTCTTCCATTCATTGAATAAGGAAGAATTACACGAAATCGTTAAGTTGATGTCACAAGAAATTGTTGATCG AGTGGCCCAACAAGGTATCAAGATCAAAATCACTCCGGCTGCCATTGACGTGGTTGCGAAGGCTGGCTTTGACCCTGAGT ACGGAGCACGACCAATTCGACGGGCATTACAGACTGAAATCGAAGATCGGTTGAGTGAAGAATTATTGACCGGCGCGATC AAGGTCGATGACCAAGTTACGATTGGTGCTAGCAAGGGTACCATTACAATTAATATTAAAACCAGCCTAAGGCAGATGGT CGTTCGACCGTTTCTTCAAAGTAGGCGCGATTAA Protein sequence : MDNLFTPSAKSVLVLAQEQAKYFKHQAVGTEHLLLALAIEKNGIANKVLQQYAVSEDDIREEIERFTGYGTLSNVGKDTY LPYSPKAKEILSVAGDEAKRLGANKIGTEHLLLAMLSDESILSSRILMNLNLDLGQTRKVVLRKLGVSDAMSKRKGNAAN RGGKKTEGTPTLDSLARDLTQLASEQEMDPVVGRSKEVKRVIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQKIVAGDVP TDMADKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYNDGHVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQT IGATTLNEYQKYIESDAALERRFATVMVNEPTEDEAVEILDGLRPRYEEHHRVTITDEAVDQAVKLSSRYISDRFLPDKA IDLMDEAAAKVRIDQMDQPTKLSKNQDKLAQLREDKETAIEAQDFEQAADIRKQEMQLKQRLDRIEADQDAEVTEGATPH YDLQVTGEDIAQVVAEWTGVPLTQLQKSESERLVNLEKILHERVVGQPEAVSAVARAIRRARSGLKDPSRPIGSFMFLGP TGVGKTELAKALAAAMFGSEDNMIRIDMSEYMERYSTSRLIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDEVEKAHPDV FNILLQVLDDGYLTDSKGRKVDFRNTILIMTSNLGATTLRDEKSVGFGATDKANDYNAVAATIRATLKQTFRPEFLNRID ETIVFHSLNKEELHEIVKLMSQEIVDRVAQQGIKIKITPAAIDVVAKAGFDPEYGARPIRRALQTEIEDRLSEELLTGAI KVDDQVTIGASKGTITINIKTSLRQMVVRPFLQSRRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004888949.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_004888949.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 7e-149 | 49 |
| clpC | YP_004888949.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG2084 | Protein | 4e-93 | 42 |
