Gene Information

Name : choQ (lp_0368)
Accession : YP_004888399.1
Strain : Lactobacillus plantarum WCFS1
Genome accession: NC_004567
Putative virulence/resistance : Unknown
Product : glycine betaine/carnitine/choline ABC transporter, ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 336039 - 337010 bp
Length : 972 bp
Strand : +
Note : -

DNA sequence : 
ATGACAACGGCAATTGAATTTCAACACGTCCAGAAAGACTTTAATGGGCAGACCGTGATTCCCGACCTTAATTTAACGAT
TGACCAGGGTGAGCTATTTGTTTTGGTAGGGACTTCTGGGAGTGGCAAAACGACGTCACTTAAAATGATCAACTGCTTAG
AGCCACTGACGGCTGGTAAAATTCTAGTTAATGGTACTGATACAACCACGATACCAGTCCGAAGTCTACGGTGGCAAATG
GGGTATGTCTTACAGCAAATTGCCTTGTTCCCAACGATGACGGTGGCGCAAAATATCGCCGTGATTCCGGAAATGAAAGG
GACAGCTAAGAAGGAAATTAATCAAACGATTGATGAGCTATTGGCGGAAGTTGGCCTCGATCCAAAGGAATACCGTGACC
GGATGCCGTCAGAATTATCCGGTGGTGAGCAGCAACGCATCGGTATCTTACGGGCGATTGCGGCGCAACCAGATATTGTT
TTGATGGATGAACCATTTAGTGCGTTAGACCCCATCTCGCGGCAACAATTGCAAGACTTGGTCTTACGGCTACACGCCCG
CTATCACAACACGATCGTCTTCGTGACGCATGATATGAATGAGGCGTTGAAGTTGGGTGACCGGATCGGTGTCATGCAAC
ACGGTCAGTTAATACAAGTCGATACGCCGGCTGCTCTGGCTCAGCATCCAGTGAACGACTTTGTGCGGAACTTCTTTGGT
GCGAGCCGAGCTAAAAATGTCTATGATGTCTACGTTGGGCGTGTAGGGCTTATTCAGGGTTATCTCACAGAAGAACCCAG
TGTTGCGAGTGGTCGGATTCAATCGTTAGACGTTCAAGCCACGTTACGCACCGCCTTTACGGCATTGACAGATCACGATT
ATGTGGCGGTCACGGAAGAAAATCGGGTTGTTGGCTATTTGGATCGCCAACGAATCGTGGCTTACTTGAGTCAACATGAA
GAAGTATCTTAA

Protein sequence : 
MTTAIEFQHVQKDFNGQTVIPDLNLTIDQGELFVLVGTSGSGKTTSLKMINCLEPLTAGKILVNGTDTTTIPVRSLRWQM
GYVLQQIALFPTMTVAQNIAVIPEMKGTAKKEINQTIDELLAEVGLDPKEYRDRMPSELSGGEQQRIGILRAIAAQPDIV
LMDEPFSALDPISRQQLQDLVLRLHARYHNTIVFVTHDMNEALKLGDRIGVMQHGQLIQVDTPAALAQHPVNDFVRNFFG
ASRAKNVYDVYVGRVGLIQGYLTEEPSVASGRIQSLDVQATLRTAFTALTDHDYVAVTEENRVVGYLDRQRIVAYLSQHE
EVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 1e-46 46
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 9e-47 46