Gene Information

Name : ISP2_4N (lp_3331)
Accession : YP_004890838.1
Strain : Lactobacillus plantarum WCFS1
Genome accession: NC_004567
Putative virulence/resistance : Unknown
Product : transposase, N-terminal fragment
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2963938 - 2965323 bp
Length : 1386 bp
Strand : +
Note : -

DNA sequence :
ATGCAAGATTATTATAACATGAATCAAACCACTTTGAGTATTGCCTTGGATTACCAACCAGAAGAGCATCATTCTGCTCG
TTACATCAACCAGCTTGTTGAGAGTTTAAAACTAAATTATGATTACCAGTTTGGCCGTCCGCGGGAATATAACCTCGGTG
CCATGTTAAAACTGGTCCTTTTAGCGTACAGCTATGGCATTTTCAGCAGTCGTAAAATTGAACGGTTTGCCCGTGAAAAC
AAGCCAGCTGGGTGGTTAATTGCCGACCAAATTCCGTCCTACCGGACGATTTGTCGCTTTAGAATTTCTGATGAACTGGC
CACTTTGACAACCGATAGCTTATCACAACTAACTCAATATCTTCGTCAAAATGGCATGATTGATGATGTTTCATTTATTG
ATGGAACTAAGATCCTAGCCGACGCCAACAAGTATAGCTTTGTTTGGAAGAAGAATACGATACGATTTGACAAGATGAAT
CGCGAAAAACTCGTTGACCTGTTAGGCGAGCTTCATGAAGCTAAAATTGTCGGTGAAATTCCGGCAGGATCAGAGCTGAC
TCCCGAACTATTGGATATCATGATTAGCAAGGTTGAGGATCACTTAGTGGTCCTTAATGAAACCGTGGAAGCAACTAAGC
AGGTTTCCCCGAACCCAGCCAAACAGCAACGCCGGACTGTTAAATCACAAAAACGTAAGTTGGATAAACGACGTGATAAA
ATGCGTGAACACCAAGCACAGCAAGCTATTTATGATCAACGTAACAGCTACTCTAAGACGGATCACGATGCCACCTTTAT
GCGGGTCAAGGAAGATCCGATGCAAAACGGTCAATTAAAACCTGCCTACAACGTTCAAATCGCCACGAGTAATCAGTTCA
TTACGGGATATCGGCTTTTCCAAAATCCAACCGACACACGAACCTTACAACCGTTTATTGAACATTTAAAGGCCAACAAT
GTGTTAGGTCACACCATCGTTACCGATGCCGGATACGGTTCCGAAAGTAATTATCGGTACTTGGAAGATGAATTCGGTCA
GCATACCGTTTTAATTCCATACGGCACAATGCTTAAAGAGAATAGTCGAAAATGGCAAAGTGATGACCGTAAGGTTATGA
ACTGGGACTATCATGAAAAAGATGATTATTTTATCAATCCACAAAACGTCCGGTTTAATTTTAATGCTTATCGTCAACGG
ACTGATAAGTATGGTTTTACCCGTGACTTTAAAGAATACATTGCCGAAAAGTATGATGAAAATCATCAACTAATTGCCGC
GGCACTAACACCAAAAGGATATCTTAAAAGGATTTCCGTGAACGAAAATTGGGAATATTTCAAATCGAAACAACGAGAAT
TACTTTCAGCTCCAGAAACTGGTTAG

Protein sequence :
MQDYYNMNQTTLSIALDYQPEEHHSARYINQLVESLKLNYDYQFGRPREYNLGAMLKLVLLAYSYGIFSSRKIERFAREN
KPAGWLIADQIPSYRTICRFRISDELATLTTDSLSQLTQYLRQNGMIDDVSFIDGTKILADANKYSFVWKKNTIRFDKMN
REKLVDLLGELHEAKIVGEIPAGSELTPELLDIMISKVEDHLVVLNETVEATKQVSPNPAKQQRRTVKSQKRKLDKRRDK
MREHQAQQAIYDQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLFQNPTDTRTLQPFIEHLKANN
VLGHTIVTDAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQR
TDKYGFTRDFKEYIAEKYDENHQLIAAALTPKGYLKRISVNENWEYFKSKQRELLSAPETG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAC67565.1 hypothetical protein Not tested Type-IVc SCCmec Protein 1e-55 43
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 5e-57 42
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 2e-58 42
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 2e-58 42
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 2e-58 42
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 1e-58 42
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 2e-60 41