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Name : ISP2_4N (lp_3331) Accession : YP_004890838.1 Strain : Lactobacillus plantarum WCFS1 Genome accession: NC_004567 Putative virulence/resistance : Unknown Product : transposase, N-terminal fragment Function : - COG functional category : - COG ID : - EC number : - Position : 2963938 - 2965323 bp Length : 1386 bp Strand : + Note : - DNA sequence : ATGCAAGATTATTATAACATGAATCAAACCACTTTGAGTATTGCCTTGGATTACCAACCAGAAGAGCATCATTCTGCTCG TTACATCAACCAGCTTGTTGAGAGTTTAAAACTAAATTATGATTACCAGTTTGGCCGTCCGCGGGAATATAACCTCGGTG CCATGTTAAAACTGGTCCTTTTAGCGTACAGCTATGGCATTTTCAGCAGTCGTAAAATTGAACGGTTTGCCCGTGAAAAC AAGCCAGCTGGGTGGTTAATTGCCGACCAAATTCCGTCCTACCGGACGATTTGTCGCTTTAGAATTTCTGATGAACTGGC CACTTTGACAACCGATAGCTTATCACAACTAACTCAATATCTTCGTCAAAATGGCATGATTGATGATGTTTCATTTATTG ATGGAACTAAGATCCTAGCCGACGCCAACAAGTATAGCTTTGTTTGGAAGAAGAATACGATACGATTTGACAAGATGAAT CGCGAAAAACTCGTTGACCTGTTAGGCGAGCTTCATGAAGCTAAAATTGTCGGTGAAATTCCGGCAGGATCAGAGCTGAC TCCCGAACTATTGGATATCATGATTAGCAAGGTTGAGGATCACTTAGTGGTCCTTAATGAAACCGTGGAAGCAACTAAGC AGGTTTCCCCGAACCCAGCCAAACAGCAACGCCGGACTGTTAAATCACAAAAACGTAAGTTGGATAAACGACGTGATAAA ATGCGTGAACACCAAGCACAGCAAGCTATTTATGATCAACGTAACAGCTACTCTAAGACGGATCACGATGCCACCTTTAT GCGGGTCAAGGAAGATCCGATGCAAAACGGTCAATTAAAACCTGCCTACAACGTTCAAATCGCCACGAGTAATCAGTTCA TTACGGGATATCGGCTTTTCCAAAATCCAACCGACACACGAACCTTACAACCGTTTATTGAACATTTAAAGGCCAACAAT GTGTTAGGTCACACCATCGTTACCGATGCCGGATACGGTTCCGAAAGTAATTATCGGTACTTGGAAGATGAATTCGGTCA GCATACCGTTTTAATTCCATACGGCACAATGCTTAAAGAGAATAGTCGAAAATGGCAAAGTGATGACCGTAAGGTTATGA ACTGGGACTATCATGAAAAAGATGATTATTTTATCAATCCACAAAACGTCCGGTTTAATTTTAATGCTTATCGTCAACGG ACTGATAAGTATGGTTTTACCCGTGACTTTAAAGAATACATTGCCGAAAAGTATGATGAAAATCATCAACTAATTGCCGC GGCACTAACACCAAAAGGATATCTTAAAAGGATTTCCGTGAACGAAAATTGGGAATATTTCAAATCGAAACAACGAGAAT TACTTTCAGCTCCAGAAACTGGTTAG Protein sequence : MQDYYNMNQTTLSIALDYQPEEHHSARYINQLVESLKLNYDYQFGRPREYNLGAMLKLVLLAYSYGIFSSRKIERFAREN KPAGWLIADQIPSYRTICRFRISDELATLTTDSLSQLTQYLRQNGMIDDVSFIDGTKILADANKYSFVWKKNTIRFDKMN REKLVDLLGELHEAKIVGEIPAGSELTPELLDIMISKVEDHLVVLNETVEATKQVSPNPAKQQRRTVKSQKRKLDKRRDK MREHQAQQAIYDQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLFQNPTDTRTLQPFIEHLKANN VLGHTIVTDAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQR TDKYGFTRDFKEYIAEKYDENHQLIAAALTPKGYLKRISVNENWEYFKSKQRELLSAPETG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | BAC67565.1 | hypothetical protein | Not tested | Type-IVc SCCmec | Protein | 1e-55 | 43 |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 2e-58 | 42 |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 2e-58 | 42 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 2e-58 | 42 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 1e-58 | 42 |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 5e-57 | 42 |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 2e-60 | 41 |
