Gene Information

Name : CTC00920 (CTC00920)
Accession : NP_781575.1
Strain : Clostridium tetani E88
Genome accession: NC_004557
Putative virulence/resistance : Virulence
Product : transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 976848 - 977513 bp
Length : 666 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAATTATAAAATTAAATAATGTAAATAAGATATATTCTTCAAAACAAAATAAAGTAAATGCATTAAACAATATAAA
TTTAAATATTAACAAAGGAGAATTAATTGCAATAGTTGGGCCATCTGGTTCAGGTAAATCTACTTTACTTAATATAATTG
GAACATTAGATAAAATTACGGATGGACAATATTTATTAAAGAATCAACAAGTTGAAAAACTAAATATTTCTCAATTGTCT
CAAGTTAGAAACAAGACTTTTGGATTTGTAGTTCAGCATTTTGCGTTAATTAGTGAATATACAGTATTTGAAAATATTGA
AATACCTTTAGAGTATGCAAAAGTAAAATATAAAGATAGAAAAGAAATAATAAATAGTATACTTCGAAAATTAAAACTAG
ATGATAAAATAAATAAAAGTATTAAAGAACTTTCTGGTGGTGAGTGTCAGAGAGTAGCAATCGCAAGAGCTATTGCTAAC
GATCCTGAAATAATACTTGCAGATGAACCTACAGGAGCATTAGATCAAAAAACTGGACAAGATGTAATGAATATTTTTAA
GGATTTAAATAGAGAGGGTAAGACAGTTATTATAGTAACTCATGATTCTAAAATAGCTGATCAATGTAATAGAATTGTAA
AGATAGAAGATGGTGTTATAATGTAG

Protein sequence : 
MEIIKLNNVNKIYSSKQNKVNALNNINLNINKGELIAIVGPSGSGKSTLLNIIGTLDKITDGQYLLKNQQVEKLNISQLS
QVRNKTFGFVVQHFALISEYTVFENIEIPLEYAKVKYKDRKEIINSILRKLKLDDKINKSIKELSGGECQRVAIARAIAN
DPEIILADEPTGALDQKTGQDVMNIFKDLNREGKTVIIVTHDSKIADQCNRIVKIEDGVIM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CTC00920 NP_781575.1 transporter NC_012469.1.7686878. Protein 8e-41 53
CTC00920 NP_781575.1 transporter CP001581.1.gene598.p Protein 8e-34 44
CTC00920 NP_781575.1 transporter NC_008702.1.4606598. Protein 4e-32 44
CTC00920 NP_781575.1 transporter NC_012469.1.7686946. Protein 1e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CTC00920 NP_781575.1 transporter VFG0869 Protein 1e-18 43