|
Name : smpB (CTC00385) Accession : NP_781085.1 Strain : Clostridium tetani E88 Genome accession: NC_004557 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 379026 - 379496 bp Length : 471 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTCAAAGGTAGAAGCAATAAAACTCTTGCAGAAAATAGAAAAGCAAGACATGATTACTTTGTAGAAGAAGCTTATGA AGCAGGAATAGAGTTAGTTGGTACAGAAGTAAAATCTATAAGGGAAGGCAAAGCCAATTTAAAGGATAGTTATGCAGAAA TAAGAAATGGAGAAGTTTTTCTTAGGAATATGCATGTAAGTCCTTATGAACAGGGTAATATTTTCAATAAAGATCCATTA AGGGATAGAAAATTATTACTACATAAAATGCAAATTTTAAAGCTAACAGCCTATACTACTCAACAAGGATATACTTTAAT ACCATTATCATTATATCTTAAAAATGGTAGAGTTAAAGTAAATTTAGCTGTAGCTAAAGGTAAAAAGAACTATGATAAAA GACAAGATTTAATAGAAAAAGCAGCTAAACGCGATATTGAAAGAGAATTAAAAGATAGAAGTAGGTATTAA Protein sequence : MVKGRSNKTLAENRKARHDYFVEEAYEAGIELVGTEVKSIREGKANLKDSYAEIRNGEVFLRNMHVSPYEQGNIFNKDPL RDRKLLLHKMQILKLTAYTTQQGYTLIPLSLYLKNGRVKVNLAVAKGKKNYDKRQDLIEKAAKRDIERELKDRSRY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-43 | 66 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 2e-34 | 51 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 5e-28 | 46 |
