Gene Information

Name : CTC00189 (CTC00189)
Accession : NP_780902.1
Strain : Clostridium tetani E88
Genome accession: NC_004557
Putative virulence/resistance : Resistance
Product : transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 144984 - 145724 bp
Length : 741 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTATATATGATAAATTAAATATATATGTAATTGTGGGAGGAATAAAAATGATTAATGGGAAAATAGCTAAAATATT
AATAGTAGATGATGATCAAAATATATGTGAAGTAATAAAAATGTATTTAGAGAGTGCAGGATTCGATACAAGAGTTTGCC
ACGATGGAAAGGAATCACAAAGTATATTTATAGAATACAATCCAGATTTAGTTTTGCTAGATATAATGTTACCTAGCATG
GACGGAATTGACGTTTTAAAATGGATTAGAAAGGAACATGAAACTCCGGTAATAATGCTAACAGCAAAAGGAGAAACTTT
TGACAAAGTTCTAGGGCTGGAATTGGGAGCAGATGATTATATGGTAAAACCTTTTGAACCAAAAGAATTATTAGCCAGGG
TAAAAGCTGTTTTAAGAAGATTTAATTCAGATAATGTAAGTAAGGAAGCATTACAGTTTAATGGTTTAACAATAGATATA
GATTCATATACTGTTATATACAATGGAAAAGAAATAAAGATGCCTCCAAAGGAATTTGAATTATTGTATTATTTAGCTAG
TAATAAAAACAGAGTTTTCACCAGAGAACAATTATTATGTGAGGTATGGGGATACGACTACCCAGGAGATTCTAGAACTG
TAGATGTTCATATAAAAAGACTTAGAGAAAAGTTGGAAGAAGGTTCAAACTGGCAAATAGAGACTGTATGGGGTGTTGGG
TATAAATTTGAGGTGAAATAA

Protein sequence : 
MFIYDKLNIYVIVGGIKMINGKIAKILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSM
DGIDVLKWIRKEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNSDNVSKEALQFNGLTIDI
DSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVWGYDYPGDSRTVDVHIKRLREKLEEGSNWQIETVWGVG
YKFEVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 6e-42 42
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 3e-42 41
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CTC00189 NP_780902.1 transcriptional regulatory protein AF155139.2.orf0.gene Protein 3e-46 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_002952.2859905.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_009782.5559369.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_002951.3237708.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_003923.1003749.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_002758.1121668.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_007622.3794472.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_009641.5332272.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_013450.8614421.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_007793.3914279.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_002745.1124361.p0 Protein 2e-47 48
CTC00189 NP_780902.1 transcriptional regulatory protein NC_012469.1.7685629. Protein 3e-48 47
CTC00189 NP_780902.1 transcriptional regulatory protein NC_012469.1.7686381. Protein 2e-42 46
CTC00189 NP_780902.1 transcriptional regulatory protein AE000516.2.gene3505. Protein 4e-43 46
CTC00189 NP_780902.1 transcriptional regulatory protein AE015929.1.gene1106. Protein 1e-36 45
CTC00189 NP_780902.1 transcriptional regulatory protein NC_013450.8614146.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein NC_002951.3238224.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein NC_007793.3914065.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein NC_002758.1121390.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein NC_010079.5776364.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein NC_002952.2859858.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein NC_007622.3794948.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein NC_003923.1003417.p0 Protein 2e-41 44
CTC00189 NP_780902.1 transcriptional regulatory protein EU250284.1.orf4.gene Protein 1e-37 44
CTC00189 NP_780902.1 transcriptional regulatory protein HE999704.1.gene2815. Protein 4e-48 44
CTC00189 NP_780902.1 transcriptional regulatory protein AF162694.1.orf4.gene Protein 3e-38 43
CTC00189 NP_780902.1 transcriptional regulatory protein FJ349556.1.orf0.gene Protein 8e-42 43
CTC00189 NP_780902.1 transcriptional regulatory protein AF310956.2.orf0.gene Protein 3e-42 42
CTC00189 NP_780902.1 transcriptional regulatory protein AF130997.1.orf0.gene Protein 7e-32 42
CTC00189 NP_780902.1 transcriptional regulatory protein AM180355.1.gene1830. Protein 2e-35 42
CTC00189 NP_780902.1 transcriptional regulatory protein CP001918.1.gene5135. Protein 7e-31 42
CTC00189 NP_780902.1 transcriptional regulatory protein AE016830.1.gene2255. Protein 2e-42 41
CTC00189 NP_780902.1 transcriptional regulatory protein U35369.1.gene1.p01 Protein 2e-42 41
CTC00189 NP_780902.1 transcriptional regulatory protein DQ212986.1.gene4.p01 Protein 5e-35 41
CTC00189 NP_780902.1 transcriptional regulatory protein AE016830.1.gene1681. Protein 4e-46 41
CTC00189 NP_780902.1 transcriptional regulatory protein CP001138.1.gene4273. Protein 1e-36 41
CTC00189 NP_780902.1 transcriptional regulatory protein CP004022.1.gene3215. Protein 4e-37 41
CTC00189 NP_780902.1 transcriptional regulatory protein CP004022.1.gene1676. Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CTC00189 NP_780902.1 transcriptional regulatory protein VFG1389 Protein 6e-33 43
CTC00189 NP_780902.1 transcriptional regulatory protein VFG0596 Protein 2e-32 41