Gene Information

Name : lolD (PD0357)
Accession : NP_778588.1
Strain : Xylella fastidiosa Temecula1
Genome accession: NC_004556
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 446231 - 446914 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
GTGATTCGAGCCGAGTCCCTTGGAAAAACCTATTCTGAGGGTAAGTTACTGACCCAAGTGTTTGATGGGCTGGATTTGCA
AGTTATGCGTGGCGAGACGGTGGCGATTGTTGGTGCCTCTGGTGCTGGTAAAAGCACGCTGCTGCATTTACTGGGCGGAC
TCGACGTTCCAACTGCGGGTGAAGTGTACGTCGCTGGGCAACGTATGTCGGCCTTGTCTGATGGGGATCGTGGTCGCTTA
CGTAACAAAACATTGGGGTTTATCTACCAGTTCCATCACTTGTTGCCGGAATTTACTGCATTGGAGAATGTGATGATGCC
GGTGTTGTTGTCTGGTCAGAGTGTATGCAGCGCTAAGATGCGCGCACAGATGTTGTTGGAAGCGGTCGAATTGGGGCATC
GTCTGAATCACAAGCCAAGTGAGCTATCCGGGGGTGAACGGCAACGTGCTGCGGTTGCGCGGGCTTTGGCCAATTCTCCT
GATTGTGTGCTTGGGGATGAGCCGACCGGAAATCTCGACAATCGTACCGCCAGCACGGTGTTTGAATTGATGCTCGAACT
CAATCGTGCGCAGCGAACCAGTTTGGTACTGGTGACACATGATCGCGGCTTGGCAAGATGCCTGGATCGGGTACTGGAGT
TGTATCAAGGTGGTTTGCGCGAATTGACCTCAGCAGAAGTCTGA

Protein sequence : 
MIRAESLGKTYSEGKLLTQVFDGLDLQVMRGETVAIVGASGAGKSTLLHLLGGLDVPTAGEVYVAGQRMSALSDGDRGRL
RNKTLGFIYQFHHLLPEFTALENVMMPVLLSGQSVCSAKMRAQMLLEAVELGHRLNHKPSELSGGERQRAAVARALANSP
DCVLGDEPTGNLDNRTASTVFELMLELNRAQRTSLVLVTHDRGLARCLDRVLELYQGGLRELTSAEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-27 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD NP_778588.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-38 43