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Name : hsdM (PD2072) Accession : NP_780246.1 Strain : Xylella fastidiosa Temecula1 Genome accession: NC_004556 Putative virulence/resistance : Virulence Product : type I restriction-modification system DNA methylase Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 2454521 - 2456902 bp Length : 2382 bp Strand : - Note : - DNA sequence : ATGCAGAAGACTCAACAAGACCAAAGCCAGATCAAGTGGATTTCCGACTTCATCTGGAACATCGCTGACAACCGCCTGCG CGATGTCTATGTGCGCGGCAAATACCGCGACGTGATCCTGCCTTTCACTGTGCTGCGACGGCTCGACGCCGTGCTGGAAG CCACCAAGGACGCGGTGCTGGAACGCAAAAAGTTCCTCGACGCCCACAACGTGGTCGAGCAGGATGGCGCGCTGCGCATG GCGGCGGGTCAGGCGTTCTACAACGTCTCGGAATTCACCTTGGCCAAGCTCAAGGCCAGCGCGGCAGGGCAGCGCCTGCG TGATGACTTCATTGCGTATCTGGACGGCTTCTCACGCGACGTGCAGGAGATCCTCACCAAGTTCAACTTCCGCAACCAGA TCCAGAAGCTGGTGGATTCCCATGTTCTCGGCTACCTGATCGAAGACTTCCTCGACCCTGAGGTCAATCTTGCGCCGTTG CCGGTGAAGGATGCCGACGGTCGCATCAAATTGCCCGCGCTGGATAACCACGGCATGGGCACGGTGTTCGAGGAGCTGAT CCGTCGTTTCAACGAAGACAACAACGAAGAGGCGGGCGAGCACTTCACCCCGCGCGACGTGGTGCAGCTCATGGCCAAGC TGTTGTTTCTGCCGGTGGCCGAGCGCATTGAGTCCAGCACTTATTCGCTTTACGACGGCAGTTGCGGCACCGGCGGCATG CTGACCGTGGCTGAGGAAGCGCTGCACGCGCTGGCCGAGCAGCACGGCAAGGAGGTCTCCATTCACCTGTTTGGCCAGGA GATCAGCGACGAAACCTACGCCATCTGCAAGGCCGATCTGCTTTTGAAGGGCGAAGGTGCGGAAGCTGAGAACATCGTCG GCGGCGCGGATAAATCCACCTTGTCCGCCGACCAGTTCCCTTCGCGCGCATTCGATTTCATGATCTCCAACCCGCCCTAC GGCAAGAGTTGGAAAACCGATCTAGATCGCATGGGCGGCAAGAAGGGGTTCAGTGACCGGCGCTTTATCGTCAGCCACGG CGGCGATCCCGAGTTTAAGCTCCTCACCCGTTCCAGCGACGGGCAGCTCATGTTCCAGGTGAACAAGCTGCAGAAGATGA AGCACAACACGCCGCTGGGCAGCCGCATCGCGCTGGTGCATAACGGCTCGGCGCTGTTCACCGGCGACGCGGGCCAGGGC GAGAGCAACATCCGCCGCTGGGTGCTGGAGAACGACTGGCTCGAAGCCATCATCGCCCTGCCGCTCAACATCTTCTACAA CACCGGCATTGCCACCTACATCTGGGTGCTGGCCAATAAGAAGGCGCAAGCGCGCCGTGGCAAGGTGCAGTTGATTGACG CATCACAGTGGTTCCAGCCGCTGCGCCGCAACCTCGGCAAGAAGAACTGTGAACTGGGTGCTGCCGATATTGCCCGCATC CTCGATCTCTACCTTGGCCAGACGCAGGAAGCTGCGCAGTCCAAATGGTTCGACACGCAAGACTTTGGCTATTGGAAGGT CACCATCGAGCGCCCGTTACGCCTGAAAAGCCAGCTCTCTGACGAACGCATTGAGTCACTGCGTTTTGCCACTGGCGAGG AGGCATTGCGTGCTGAGATCTACGCCACCCACGGCGAGGCGCTGTATACCGAGTTTGCCAAGTGCAAACCGGCCATTGAG GCATGGCTGAAAGGCGAGGATGAGAACGAGGATGACGACAGCGACGACAGCGACAGCGGCGACGACAACGAGGCCCCCGC CGCCCGCAAAGCTGTGCCCGTCAAGCGCCGCAAAAAGCTGCTTGATGCATCGACGTGGCAGCGCGACAAAGCACTGATGG AGGTGGCGCAACGGGCGCAGCAGGCATTGGGCCGCGCCGTGTTCGACGACCACAATGCGTTCTGCGTCGGCTTCGATGCA GTGTGCAAGGCGCAGGACGCACGCTTAAGCGCGCCAGAGAAGAAGGCCATCTACAAGGCGGTGAGCTGGCGCGATGACGC CGCACTGCCGGTCATCGCCAAGCGCAGTAAGCTCAAGGCAGGCGAATGCTTCGAGCCCGGCTTTGATGGCGCGTATCTGG AAACCGTGGGCAAGGATCGCTTCATGGTCGAGTACGAACCAGACAGCGCGCTGCGCGATACCGAGCAGGTGCCGTTGCAG GAACCAGGCGGCATTGATGCCTTTTTTGCCCGCGAAGTGCTGCCGCACGCGCCGGATGCCTGGATCGCCACGGACAAGAC TCAGATTGGCTACGAGATTTCGTTTGCTCGCTATTTCTACAAGCCCGTGCCGTTGCGGACGCTGGCGGACATCCGCGCGG ACATCCTTGCGCTGGAGCAGCAGACGGAAGGGTTGTTGCATAAGATTGTGGGGAACGTGTGA Protein sequence : MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVVEQDGALRM AAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPL PVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGM LTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKSTLSADQFPSRAFDFMISNPPY GKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQG ESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI LDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEIYATHGEALYTEFAKCKPAIE AWLKGEDENEDDDSDDSDSGDDNEAPAARKAVPVKRRKKLLDASTWQRDKALMEVAQRAQQALGRAVFDDHNAFCVGFDA VCKAQDARLSAPEKKAIYKAVSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQ EPGGIDAFFAREVLPHAPDAWIATDKTQIGYEISFARYFYKPVPLRTLADIRADILALEQQTEGLLHKIVGNV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1769 | NP_231404.1 | DNA methylase HsdM | Not tested | VPI-2 | Protein | 2e-147 | 45 |
| VC0395_A1367 | YP_001217310.1 | DNA methylase HsdM | Not tested | VPI-2 | Protein | 2e-147 | 45 |
| VPI2_0017c | ACA01834.1 | DNA methylase HsdM | Not tested | VPI-2 | Protein | 3e-147 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hsdM | NP_780246.1 | type I restriction-modification system DNA methylase | VFG1102 | Protein | 9e-148 | 45 |
