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Name : PD1429 (PD1429) Accession : NP_779627.1 Strain : Xylella fastidiosa Temecula1 Genome accession: NC_004556 Putative virulence/resistance : Virulence Product : DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1112 EC number : - Position : 1660432 - 1664004 bp Length : 3573 bp Strand : + Note : - DNA sequence : ATGCAAGCACGCTCTTCTGCTTACGCGCGCTATTGGCGCCATTCACTGGCTGACAGTGGAACAGACCGTGGTGTACTTCG TGATGCTGCTGACAGTTCATTCTTGGAGGTGTCCAAGCAGCAATTAGAAAGCGGCTGTGTGGACCGCGACATTGTCGCGG CCTGTTTCAATAAAGAAGCTGAACAGGTCCAAACGGTCGAAGTGGTGATCCGCCTCAAGGTCTATGTGCTGCTGCTGCAA CACGGCACGCCGCAGCGCGCGGGACACCCCAAGATCGTCACGCCGCTGGTGACACAGGCGTTATTGGCGCGGGATGGCAG GATCTATCCGTTGGCGCGGACGATGATCCCTCGTGACATTCTGAAGCCTTTGGTAGGGGGACATTTCGCCATTGGCACGG TGTCGGATCAGGATGCGTTTCTGACAAGGCAGCCGGTGCCTGGCATTGCTTTTACGGGGACGGAAAATAATGCGGACTCA TTGGGGGATTCCAACAATGCCGACTTTGATCGGCAATGGAAGCAATTTTTAGCGGGCTGTGATCGGCTATTAGCGGAGGT CGGTGGTGGCTGGCCTGGCGCTCAGGGGGATTATCTGGAGGCCGACTATGGGTATCTCACCAAGAAAGCAGCGTTCTCCA GCCGACATATCCTGGCTTTATACGACCATCTTTTGCTCGAAACAACGCCACAGGTGCCGTTGTTTGAGCGCTATGCCAGC GGTGAGATGGCGCCGCCTGAACTATGTTTGCCGCCGCATGCCGGGTTCTCACAACGGCTGGCGCATGGCAGCGATAAGCG TGCTTTGAGCCGGACGCAACGCGATGCGCTAACGCATCTGCTGGTGGCTCGACAAGGGGAAATTCTTGCGGTGAATGGCC CGCCGGGCACTGGAAAAACCACGCTGGTGTTATCGGTGGTGGCGTCGTTATGGGCGCATGCGGCGCTGGCAGGGGGGGAG CCGCCGGTCATTGTCGCTGCGTCGACCACGAATCAGGCGGTGACCAATATCATTGATGCGTTTGAGAAGAATTTTGCAAA GGGAGAGGGTCCTTTTGCGGGGCGTTGGCTGCCCAAGATCAAGAGTTTTGGTGCTTTATTAGGCTCAGCCGACAAAGAGA GCAAAACAGCAGACAAGTATCACACCGAAGATTTTTTTAATGCGGTGGAATCAGTCGGCTACATCGCTGAGGCAGAGCAG CATTATTTGCGTGCGGCGGCGGCGGCATTTCCAGAGATCCCGCAGGCGTCGTTCAATGTCAAGGGTGTCACCGCGGCATT GCAGGAGGCGATTCGGAAGGAGGCGGCAACACTGGCCGCCATTGAGCAGGCGTGGTCAGGCTTGAATGATGCGCGTGATG CGCTGCGGGCCGAGTTGGGGGAGACGCCCGCGACGACGATGACGCAACGCCGCACCCAACGGGACGCAGCGCAGGCGGAG AAGCAGGTCATTGAAACGCTCATCACGCAGTGGGAGCGCTATGGTGCGGACGAGTCGCTGGTGTATGGGTTGTTTTCTTG GCTGCCTGCGGTGGCCAAAAAGCGGATGCGGTTGGTCCGGGTGTTTTTGAACTCCATCTGGCCAGTGCATTACCCAACAC AGACGTGGGAGAGCATTGAGCAGGTTGATGGGTGGCTCAGTGGGATGCAGCGCCAATGTGATGACAGGCTTCAGGAGCAC TCCTGGGCTGTGACACGCGGTGAAAAGGTGCTGCATGAGGAGCAGTGCCACATCACCACATGGCAGGCCGCGTTAGCAAA GGAGTCAGCACTTACAGGGCTGATGGAGGCGGCAGGCCAGGTCTCTCTTGCGGACTGTGATGCACTCGCCGATACATCCA TCCGCTTTCGGATCTTTCTGCTAACCACGCACTATTGGGAGGGGCGTTGGTTGTCGGAGATGCAGGCCCAGTTGCCAGCG GATCTGGATGGGGAGAAGAAAAAGACGGGGGGTACCGCCGTGGAACCGCGCTGGCGGCGACGGATGAAATTAACGCCGTG TATTGTGTCGACGCTCTTCATGCTGCCCAAAAAGATGCAGGTTGCCAGGCGTGATGAGAAAAACTTCAGCCGTAACTACC TGTATGACTTTGCGGATTTGCTGATTGTTGACGAGGCGGGCCAGGTGCTTCCTGAAGTAGCTGGTGCATCATTTGCACTG GGCAAGCAAGCTTTGGTGATTGGGGACCAGCTGCAGATTGAACCGATTTGGTCGATTCCGGAAAGCATTGATATTGGTAA CCTGCATGCTGCTGAGCTGCTGGGGAAGGAGGAGGATGCCTACGAGCGGCTTTGTCAGTCTGGAAGATCCGCAGCATCAG GCAGCGTGATGCAGATCGCACAACGACTGAGCCGGTATCACTATGACCCTGAGATGGCACGCGGCATGTTTCTGTACGAG CACCATCGCTGCTTTGATGAGATTGTCAGTTACTGCAATGCGCTGTGCTATCAAGGCAAACTCATCCCCAAGCGCGGACC CAAGGTGGCAGCGCTGAAGAATGCAGCAGGAAAGGAAACAGGAGATGGTTTGCCGGCGCTGGGGTATCTGCACGTCGATG GTCTCTGCCAGAAAAGTAGCGGCGGCAGCCGCCATAACCTCTATGAGGCACAGACCATTGCGGCGTGGCTTGCCGAGCAC CGCGAGTCGTTGCAAGCACAGTATGGGAAGCCGCTGCATTGCATTGTGGGCATCGTGACGCCGTTTGGGGCGCAGGTACG TGCCATTTCACAAGCCTGCCGTGACGTGGGAATTGAGGTGGGCCACGAAAAGGATGGGATCACGGTTGGGACGGTGCATG CGCTGCAAGGGGCGGAACGGCCTGTGGTGATCTTTTCTGCGGTGTATAGCAAGCATGCCGATGGCGGTTTTATCGACCAG CGTACAAGCATGTTGAATGTGGCGGTGTCGCGTGCCAAAAACACTTTTTTAGTGTTTGGGGATATGGATGTCTTCACGGC GGCACCAAAGAGCAGGCCGCGTGGCCTGTTGGCGCATTATCTTTTTAAAGATGCAAGCAACGCGCTGTGTTTTCAACCGT TAGTCCGCAAAGATCTGCAACAGGTCAGTACAGCGGTGGAGGTACTGCAGGACGCCGCCGAACATGACGCTTTTTTATTG AAGGCGCTCAACAAGGTGCAGCGTGAAATTCATATTGTGAGTCCCTGGATCAACAAAGATCGCATTCAAGACATCGGTGC CTTCAAGGCAATGCAGGAGGCGGTGAAGCGTCAGGTGCAGGTCACGGTCTACACGGATCAGGATTTGAACACCGACGACA AGAAAGACATAAAGAAGATCACTAAAGTGCTGCAAGCCGCCAGGGCGTTGCGCGGTGTGGGGATTGAGGTGAATTTTGTC GACAGAGTCCACAGCAAAATGGTGATTGGGGACGATGAGGTGTTTTGTGTTGGGTCGTTCAATTGGTTCAGTGCCAACAG AAGCGCAATGTACGCCAAGCATGAAACGTCATTGGTTTATCGTGGTCGCGGGCTTGCAGATGAGAGGCAAACCAGGCTGA ACAGTTTACGGCAGCGAATCACGGATGATCCTCAGCAAATCGGCCAGGCATGA Protein sequence : MQARSSAYARYWRHSLADSGTDRGVLRDAADSSFLEVSKQQLESGCVDRDIVAACFNKEAEQVQTVEVVIRLKVYVLLLQ HGTPQRAGHPKIVTPLVTQALLARDGRIYPLARTMIPRDILKPLVGGHFAIGTVSDQDAFLTRQPVPGIAFTGTENNADS LGDSNNADFDRQWKQFLAGCDRLLAEVGGGWPGAQGDYLEADYGYLTKKAAFSSRHILALYDHLLLETTPQVPLFERYAS GEMAPPELCLPPHAGFSQRLAHGSDKRALSRTQRDALTHLLVARQGEILAVNGPPGTGKTTLVLSVVASLWAHAALAGGE PPVIVAASTTNQAVTNIIDAFEKNFAKGEGPFAGRWLPKIKSFGALLGSADKESKTADKYHTEDFFNAVESVGYIAEAEQ HYLRAAAAAFPEIPQASFNVKGVTAALQEAIRKEAATLAAIEQAWSGLNDARDALRAELGETPATTMTQRRTQRDAAQAE KQVIETLITQWERYGADESLVYGLFSWLPAVAKKRMRLVRVFLNSIWPVHYPTQTWESIEQVDGWLSGMQRQCDDRLQEH SWAVTRGEKVLHEEQCHITTWQAALAKESALTGLMEAAGQVSLADCDALADTSIRFRIFLLTTHYWEGRWLSEMQAQLPA DLDGEKKKTGGTAVEPRWRRRMKLTPCIVSTLFMLPKKMQVARRDEKNFSRNYLYDFADLLIVDEAGQVLPEVAGASFAL GKQALVIGDQLQIEPIWSIPESIDIGNLHAAELLGKEEDAYERLCQSGRSAASGSVMQIAQRLSRYHYDPEMARGMFLYE HHRCFDEIVSYCNALCYQGKLIPKRGPKVAALKNAAGKETGDGLPALGYLHVDGLCQKSSGGSRHNLYEAQTIAAWLAEH RESLQAQYGKPLHCIVGIVTPFGAQVRAISQACRDVGIEVGHEKDGITVGTVHALQGAERPVVIFSAVYSKHADGGFIDQ RTSMLNVAVSRAKNTFLVFGDMDVFTAAPKSRPRGLLAHYLFKDASNALCFQPLVRKDLQQVSTAVEVLQDAAEHDAFLL KALNKVQREIHIVSPWINKDRIQDIGAFKAMQEAVKRQVQVTVYTDQDLNTDDKKDIKKITKVLQAARALRGVGIEVNFV DRVHSKMVIGDDEVFCVGSFNWFSANRSAMYAKHETSLVYRGRGLADERQTRLNSLRQRITDDPQQIGQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| S3169 | NP_838460.1 | superfamily I DNA helicase | Not tested | SHI-1 | Protein | 0.0 | 47 |
| SF2965 | NP_708739.1 | superfamily I DNA helicase | Not tested | SHI-1 | Protein | 0.0 | 47 |
| APECO1_3532 | YP_854230.1 | superfamily I DNA helicase | Not tested | PAI I APEC-O1 | Protein | 0.0 | 47 |
| ORF_2 | AAZ04413.1 | superfamily I DNA helicase | Not tested | PAI I APEC-O1 | Protein | 0.0 | 47 |
| unnamed | CAD42018.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PD1429 | NP_779627.1 | DNA helicase | VFG0627 | Protein | 0.0 | 47 |
| PD1429 | NP_779627.1 | DNA helicase | VFG1537 | Protein | 0.0 | 46 |
