Gene Information

Name : kdsB (PD1337)
Accession : NP_779535.2
Strain : Xylella fastidiosa Temecula1
Genome accession: NC_004556
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 1564587 - 1565360 bp
Length : 774 bp
Strand : +
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence : 
ATGAGTCTCGAAATCGTGCCTTTTGTAGTTGCTATTCCCGCACGTTTTTCCGCATCACGACTGCCTGGAAAACCGCTACG
CCTGCTTGGTGGTCGCCCACTGATTCACAGGGTAGCCGAACGGGCACTTAGTACAGGGGCACGAGAAGTATGGGTTGCAA
CCGACGATGTACGCATCGCTGAGGCCGTTGCTTCTCTGGACGGTGTCCACGTGGCGATGACCGCAAACACTCACCTATCC
GGGAGCGACCGTTTAGCCGAGTGCGCACGCATCGCCGGATGGGATCCTGAGGTGTGCGTGGTCAACCTACAGGGCGATGA
GCCGTTCGCACCAGCGGCGGGGATCCGTGCTGTAGCGGCATTGCTGCATCACAGCAACGCCGACATGGCAACGCTCGCAA
CGACCATCGACAAGAGCGAAGACCTGTTCAACCCGAATATCGTCAAACTAGTGTGCAATACACATGGAGAAGCGTTGTAC
TTCAGCCGTGCACCGATCCCATGGAATCGGGATACCTTCGCCACAACGCGTGAACCAACGCCATTGGGTCCGTGGCTACG
CCACATCGGTCTCTATGCCTGCAACGCTGGGTTCCTGCAACGCTTCACCACGATGCAACCGGGGACCTTGGAGCAGATTG
AATCGTTGGAACAACTGCGTGTGCTGGAAGCAGGGCATCGGATCGCGGTCAGGATCACTCCGGAACATTTCCCGCCCGGT
ATCGATACCCCAGAAGACTTAGCCAAAGCCGAGAAGGCATTGGAGGATGTATGA

Protein sequence : 
MSLEIVPFVVAIPARFSASRLPGKPLRLLGGRPLIHRVAERALSTGAREVWVATDDVRIAEAVASLDGVHVAMTANTHLS
GSDRLAECARIAGWDPEVCVVNLQGDEPFAPAAGIRAVAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNTHGEALY
FSRAPIPWNRDTFATTREPTPLGPWLRHIGLYACNAGFLQRFTTMQPGTLEQIESLEQLRVLEAGHRIAVRITPEHFPPG
IDTPEDLAKAEKALEDV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 3e-27 43
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 4e-27 43
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 5e-27 43