Gene Information

Name : ntrC (PD1021)
Accession : NP_779233.1
Strain : Xylella fastidiosa Temecula1
Genome accession: NC_004556
Putative virulence/resistance : Virulence
Product : two-component system, regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1219090 - 1220517 bp
Length : 1428 bp
Strand : +
Note : -

DNA sequence : 
ATGGTTGAGATTGATGCGACTTCCCCACGCATCTGGGTGGTTGACGACGATCGCTCGGTACGCTTCGTGTTATCTACTGC
ACTGCGTGATGCAGGCTATATCGTGGAAGGTTTCGAGAGTACTTGCGCAGCGTTGCAAGCCCTAGCAGCCTCCCCAATCC
CAGACTTATTGTTCACCGACGTACGCATGCCTGGTGATGATGGTTTGATTTTGCTGGACAAGCTCAAAGCACGCCATCCG
CACCTTCCAGTAATTGTTATGTCTGCCTACACCGATGTGGCTAGCACTGCCGGTGCATTTCGCAGTGGTGCACATGAATT
CTTGTCCAAGCCATTTGATCTAGACGATGCGGTTGCGTTGGCAGCTCGTGTGTTGCCACATACACAAGGATCTCATGGGG
GATCACCCATATTGCCTGCTGCCAACAGTAATCCCGTCTTGATCGGCAGCACTCCGGTGATGCGTGCTTTGTTCCGTGCA
ATCGGACGGTTGGCGCAGGCACCACTCTCGGTGCTGATTAACGGTGAAACAGGTACTGGCAAAGAGCTCGTTGCACGTGC
GTTACACAACGAATCTCCGCGTGCGCAGGCGCCGTTCGTTGCGCTGAATGCTGCGGCGATTCCAACCGAGCTTTTGGAGA
GCGAGTTGTTCGGTCACGAGGCCGGCGCGTTTACAGGAGCGACCAAACGTCATATTGGCCGCTTTGAGCAAGCCGATGGC
GGCACTTTATTTTTGGATGAAATCGGCGATATGCCGTTGTCTTTGCAGACGAGACTGTTACGTGTACTGGCTGAAAATGA
ATTCTTCCGGGTCGGGGGCCGCGAACTGATCCGTGTCAATGTCCGTGTGATTACTGCGACCCATCAGGATCTTGATATGT
TGGTCGAGCAGGGGCGTTTTCGTTCCGATCTCTTGCACCGTTTAGATGTAGTGCGCTTGCAACTGCCATCGTTACGTGAG
CGGCGTGATGATGTGGCACAGTTGGCCGAGAATTTTTTGGTAATGGCTGGGCACAAGCTGGATATCTCAGTTAAACGTTT
GTCTGCCGATGCGCTAGAGATACTGCGTCGCTACGATTGGCCAGGTAATGTCCGTGAGCTCGAAAATATTTGCTGGCGAT
TAGCTGCTTTGGTGAACACTGAGACAATTGATGCCAATGATGTTGAAGCTGTGTTAACACATGGCAAGCGCAAGCGTTGT
AACACTGAAAGCGATTGGGATATCCATTTAGCCAAATGGGCGGAAGACCGCTTAGCTGCAGGCGCAACTGCTGTGCATGC
CGAAGCTCGCAAATGTTTGGACCGAACGCTACTGGATGTGGCATTGCGTTTGACGCAGGGCCGTCGTGCCGAAGCAGCTG
CACGTCTTGGTCTGGGTCGTAACACGTTGACCCGCAAGCTTGGCTCAAGTCAACGTCGTAGGAGGTAA

Protein sequence : 
MVEIDATSPRIWVVDDDRSVRFVLSTALRDAGYIVEGFESTCAALQALAASPIPDLLFTDVRMPGDDGLILLDKLKARHP
HLPVIVMSAYTDVASTAGAFRSGAHEFLSKPFDLDDAVALAARVLPHTQGSHGGSPILPAANSNPVLIGSTPVMRALFRA
IGRLAQAPLSVLINGETGTGKELVARALHNESPRAQAPFVALNAAAIPTELLESELFGHEAGAFTGATKRHIGRFEQADG
GTLFLDEIGDMPLSLQTRLLRVLAENEFFRVGGRELIRVNVRVITATHQDLDMLVEQGRFRSDLLHRLDVVRLQLPSLRE
RRDDVAQLAENFLVMAGHKLDISVKRLSADALEILRRYDWPGNVRELENICWRLAALVNTETIDANDVEAVLTHGKRKRC
NTESDWDIHLAKWAEDRLAAGATAVHAEARKCLDRTLLDVALRLTQGRRAEAAARLGLGRNTLTRKLGSSQRRRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-48 41
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-48 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ntrC NP_779233.1 two-component system, regulatory protein BAC0467 Protein 4e-69 46
ntrC NP_779233.1 two-component system, regulatory protein BAC0089 Protein 8e-64 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ntrC NP_779233.1 two-component system, regulatory protein VFG1249 Protein 2e-60 43
ntrC NP_779233.1 two-component system, regulatory protein VFG1214 Protein 4e-59 41