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Name : CAB445 (CAB445) Accession : YP_219859.1 Strain : Chlamydophila abortus S26/3 Genome accession: NC_004552 Putative virulence/resistance : Virulence Product : membrane transport protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 511192 - 513321 bp Length : 2130 bp Strand : - Note : Similar to Yersinia enterocolitica low calcium response locus protein D LcrD SWALL:LCRD_YEREN (SWALL:P21210) (704 aa) fasta scores: E(): 7.2e-118, 46.23% id in 703 aa and to Yersinia pestis, and Yersinia pseudotuberculosis low calcium response locus prote DNA sequence : ATGAATAAGCTACTCAATTTTGTCAGTAGAACCTTTGGGGGAGATGCAGCCCTAAATATGATCAACAAATCGAGTGACCT CATCCTTGCCTTATGGATGATCGGTGTCGTTTTGATGATCATCTTGCCCCTACCTCCGACTATTGTCGACTTGATGATCA CTATCAATTTAGCTGTTTCTGTTTTCCTATTGATGGTGGCTTTGTATATTCCTAGTGCCCTACAGTTATCGGTTTTCCCC TCACTACTCCTAATCACAACGATGTTTCGGTTAGGTATTAACATTTCTTCCTCAAGACAGATTCTTCTTAAAGCTTATGC CGGGCACGTCATTCAAGCTTTCGGAGACTTCGTCGTTGGAGGGAACTATGTTGTTGGATTTATTATCTTCTTAATCATTA CCATTATTCAGTTTATCGTTGTTACCAAAGGTGCTGAGCGTGTTGCTGAAGTAGCTGCAAGATTCCGATTAGATGCTATG CCTGGTAAGCAAATGGCTATTGATGCTGACTTGCGCGCTGGAATGATTGATGCACAACAAGCCCGCGATAAACGCGGCAT GATTCAAAAGGAAAGTGAACTCTATGGAGCCATGGACGGTGCCATGAAGTTCATTAAAGGGGACGTTATCGCAGGTATTG TGATCTCCTTAATTAACATTGTTGGTGGTTTGACGATTGGCGTGGCTATGCATGGCATGGACCTAGCTCAAGCTGCTCAC GTGTACACTCTGTTATCTATCGGTGATGGTTTAGTTTCTCAGATTCCTTCTCTACTCATTTCCTTAACTGCTGGTATCGT GACCACTCGAGTTTCTAGTGATAAAAACACGAACTTGGGTAAAGAGATTTCCTCTCAGTTAGTTAAAGAACCTAGAGCTT TGCTCTTAGCCTCCGCAGCAACTTTAGGCGTGGGCTTTTTTAAAGGGTTCCCACTTTGGTCATTCTCCATCCTCTCTCTG ATCTTTGGTATTCTTGGTGTTATCCTGCTTGCGAAGAAAAATAATGCTACGAAACAGGGGGCCTCTGGAGCCTCAACAAC AGTAGGAGCTGCTGCAGACGGAGCAGCTGCAGCGGAAGATAACCCAGATGACTACTCTTTAACGCTACCAGTAATTTTAG AATTAGGAAAAGACTTATCTAAGTTGATTCAACAAAGAACAAAGTCTGGTCAAAGTTTCGTTGACGATATGATCCCGAAA ATGCGTCAAGCTCTGTATCAAGACATTGGTATTCGTTACCCAGGAATTCATGTGCGCACGGACTCTCCTTCTCTAGAGGG TTATGATTATATGATTCTTCTGAATGAAGTTCCCTACGTTCGAGGGAAAATTCCTGCAAACCATGTGTTGACTAACGAAG TTGAGGAAAATCTTAAGAGATACAATCTCCCTTTCATTACGTATAAAAATGCTGCAGGTCTCCCTTCTGCTTGGGTTAGT GAAGATGCTAAAACTATTTTAGAAAAAGCAGCTATTAAATATTGGACACCTTTAGAGGTGATTATTCTTCATCTGTCATA CTTCTTCCATAGAAGCTCCCAAGAGTTCTTAGGAATTCAAGAGGTACGCTCTATGATTGAATTTATGGAACGCTCGTTTC CAGATCTTGTTAAAGAAGTTACGCGCCTTATTCCTCTGCAAAAACTCACTGAAATCTTCAAACGTTTAGTACAAGAGCAG ATCTCTATCAAAGACTTGCGCACAATTTTAGAATCCTTAAGTGAATGGGCGCAAACCGAAAAAGATACTGTATTGCTAAC GGAATACGTACGTTCTTCTCTTAAACTGTATATTAGTTTTAAGTTTTCCCAAGGACAATCTGCGATTTCGGTATACTTAC TCGATCCCGAAATTGAAGAGATGATCCGTGGAGCAATTAAACAAACCTCTGCAGGATCGTATCTTGCTTTGGATCCTGAT TCAGTCAATCTAATCTTAAAATCTATGAGAAATACCATTACGCCAACTCCTCCGGGAGGTCAACCTCCTGTGCTGTTGAC AGCAATTGACGTAAGACGATATGTAAGGAAATTAATAGAAACCGAATTCCCTGATATCGCTGTGATTTCTTACCAAGAGA TTCTCCCAGAGATTCGTATCCAGCCATTAGGAAGAATTCAGATTTTCTAA Protein sequence : MNKLLNFVSRTFGGDAALNMINKSSDLILALWMIGVVLMIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFP SLLLITTMFRLGINISSSRQILLKAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM PGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAH VYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILSL IFGILGVILLAKKNNATKQGASGASTTVGAAADGAAAAEDNPDDYSLTLPVILELGKDLSKLIQQRTKSGQSFVDDMIPK MRQALYQDIGIRYPGIHVRTDSPSLEGYDYMILLNEVPYVRGKIPANHVLTNEVEENLKRYNLPFITYKNAAGLPSAWVS EDAKTILEKAAIKYWTPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQ ISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDPD SVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEILPEIRIQPLGRIQIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 8e-141 | 46 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 3e-95 | 42 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-95 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CAB445 | YP_219859.1 | membrane transport protein | VFG2126 | Protein | 0.0 | 92 |
| CAB445 | YP_219859.1 | membrane transport protein | VFG0384 | Protein | 2e-140 | 46 |
| CAB445 | YP_219859.1 | membrane transport protein | VFG0064 | Protein | 2e-144 | 46 |
| CAB445 | YP_219859.1 | membrane transport protein | VFG0198 | Protein | 3e-129 | 46 |
