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Name : clpB (TW758) Accession : NP_789679.1 Strain : Tropheryma whipplei TW08/27 Genome accession: NC_004551 Putative virulence/resistance : Virulence Product : heat shock protein ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 854662 - 856761 bp Length : 2100 bp Strand : - Note : Similar to Streptomyces albus G heat shock protein ClpB SWALL:Q9Z6E4 (EMBL:AF076980) (857 aa) fasta scores: E(): 2.9e-134, 59.62% id in 686 aa. Note approx 150 residue N-termunal truncation relative to all homologues. DNA sequence : ATGTCTGAATCACAGTCTGAATTAGACAAGTACGGCACGAACCTCACAAAGACTGCGGCAACAAACAAGCTCGATCCGGT GATAGGCCGCGATGCAGAGATCCGGCGGGTGTGTCAGATTCTCTCCAGACGAACTAAGAATAACCCCGTTCTGATAGGGT CAGCAGGTGTTGGTAAAACTGCTATAGTTGAGGGCCTTGCGCAGCGTATTGTTGCAGGGGATGTTCCTGAGAGTTTGCGG AACAAGGAAATAGTTAGTCTCGATTTATCGGCCCTGCTTGCTGGTGCATCTTACAGGGGAGAGTTCGAGAAACGTGTCAA AAATCTTTTGGAAGAGATACAAAAGTCTAAGGTAATAATCTTCATAGATGAGGTTCACACACTTATGAGTGCCGGCGCAG CAGAAGGTGCAATTGCGGCGGGTAATATGCTAAAACCCCTTTTGGCTCGAGGGGAACTCAGGCTTATTGGCGCGACCACT CTGGATGAATATCGTGAGCATTTGGAAAAAGACCCTGCACTGGAAAGACGATTCCAGCAAGTGTTTGTTGGTGAGCCAAA TCTTGAAGACTGCATAGCGATTATGCGGGGCTTGAAAGAGCGTTACGAGGCTCATCATAAAGTGAGTATATCCGACACAG CACTTGTGACTGCCGTTGAGTTGTCGAGTCGATATATAACGGGCAGGCAACTTCCTGATAAGGCAATCGACTTGCTCGAC GAGGCAGCCAGTTCATTGCGCATGGAAATTGATTCATCACCGGTTGAGCTTGATCAGCTTCGTAGGGAGGTTGATCGGTT GCGACTCGAGGAGTTGGCATTAAAGAGTGAGAATGACCCTACGAGTGAACAACGTCTAAGATCTATAACTAACCAACTTT CTGGCAAGCAAGAAATGTTGAATACATTACAGGCAAGCTGGAACTCCGAGAGGGCGCGTCTGAATCAGATTGGCGCTTTG AAGGAGCAGATTGATATTGCGAAACAATCTGCAGATATTGCCCAGCGCGAGGGTCGCCTTGAAGATGCATCACGACTTCT TTATGCAACAATTCCACAATTGCAGAAAAATTTGGCGGAGAAGTTGGAAGAACAGGACTCTGCCCCGCTTGTCAGTGACC AGGTAATGCCGGAAGATATTGCGTCTGTTGTTGAGGGATGGACAGGTATTCCTGTAAAAAAGCTTATGCAAAAAGATGCC AAACAGCTGCTGCATCTTGAGGAGGATTTGTCCAAATCTGTTATAGCCCAGAAGGTAGCCATAGGTGTTATTGCGGATGC AGTACGGCGTTCGCGCGCGGGACTGTCGGATCCAAACCGACCTTCCGGAACTTTTTTATTTCTCGGCCCAACGGGGGTTG GAAAAACACAACTGGTTAAAGCTTTAGCATCTTTGTTATACGATGGTGAAATTGTAAGAATTGACATGTCGGAGTATTCA GAAAAATTCTCTATCTCACGTCTTATTGGCGCTCCCCCGGGGTATATCGGTCATGAAAGCGCTGGACAGCTTACTGAGTC TGTTAGGCGGCGGCCATATTCAGTTGTATTGTTTGATGAAGCAGAAAAAGCGCATCCTGAGGTTTTTGATATCCTACTGC AGGTTCTGGATGAAGGACGCCTAACAGACTCTCATGGTCGCACTGTTGACTTTAGAAACACGATTATAGTTTTAACTTCT AATATAGGCTCGCGTTACCTATCAGACATTTCCCTTGAGGCTACTACAGCGCACGAGTATGTTAATGATGAGGTTCGCAG AACCTTTCGTCCAGAATTTTTGAACAGACTCGATGAAATTGTTATTTTTGAGCCATTGTCGCAAAGTGATATTTGTCAAA TTGTTGACCTGAATATAGAATCCCTGAATAAGCGGATCAAGGATAGGCGGATTGTTGTGACAGTCAGTGAGGATTTAAGG CGTTGGCTGTCAAAGAGCGGCTATGACGTGATTTACGGCGCGCGGCCATTGAGGAGGCTTATTCAGCGTGAGATAGAAGA TAGACTTGCAAAGTTGATTATAGAGGGTCTTATACATGACGGACAGACTGCGTCTTTTGACCTGTCTGGGGGCGCTGTGA ATGCCCAGGTGTGCTCCTGA Protein sequence : MSESQSELDKYGTNLTKTAATNKLDPVIGRDAEIRRVCQILSRRTKNNPVLIGSAGVGKTAIVEGLAQRIVAGDVPESLR NKEIVSLDLSALLAGASYRGEFEKRVKNLLEEIQKSKVIIFIDEVHTLMSAGAAEGAIAAGNMLKPLLARGELRLIGATT LDEYREHLEKDPALERRFQQVFVGEPNLEDCIAIMRGLKERYEAHHKVSISDTALVTAVELSSRYITGRQLPDKAIDLLD EAASSLRMEIDSSPVELDQLRREVDRLRLEELALKSENDPTSEQRLRSITNQLSGKQEMLNTLQASWNSERARLNQIGAL KEQIDIAKQSADIAQREGRLEDASRLLYATIPQLQKNLAEKLEEQDSAPLVSDQVMPEDIASVVEGWTGIPVKKLMQKDA KQLLHLEEDLSKSVIAQKVAIGVIADAVRRSRAGLSDPNRPSGTFLFLGPTGVGKTQLVKALASLLYDGEIVRIDMSEYS EKFSISRLIGAPPGYIGHESAGQLTESVRRRPYSVVLFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTS NIGSRYLSDISLEATTAHEYVNDEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLR RWLSKSGYDVIYGARPLRRLIQREIEDRLAKLIIEGLIHDGQTASFDLSGGAVNAQVCS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-90 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_789679.1 | heat shock protein ClpB | VFG2076 | Protein | 4e-107 | 42 |
| clpB | NP_789679.1 | heat shock protein ClpB | VFG2084 | Protein | 5e-95 | 41 |
