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Name : smpB (TW571) Accession : NP_789499.1 Strain : Tropheryma whipplei TW08/27 Genome accession: NC_004551 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 623081 - 623716 bp Length : 636 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : GTGCACAGGCGATCTTCTAAGAGTTACTCTTCCAGGAATTCTAAAACTCCAGAGCGTTCTAAAATTCCAGATTGCGTTAT CGCATCAAACAAAAGCGCAGAATATAACTATTTTCTGGACAAAACATTTGAGGCAGGCCTTGTCCTACTGGGCAGTGAGG TAAAAAGCGTCAGACAGCAAAAAATAAGTCTGTCTGAGGCCTATATTTATGAGGATAACTCAGAAATATGGCTTGCCAAT CTGTATATCCCAGAGCACAAAACGGGGGGATGGACCAATCATAACCCCCGGCGACTCAGAAAACTATTGTTACACAAGTA CCAAATTGCACGTCTACGAAAAGATCTATTAATCCCTGGTATAACCCTGGTGCCCATCAAGTTTTATTTCAGGAACGGCC GCGCGAAGCTTCTTATATCCCTTGCGCGAGGTAAAAAGCTAATTGACAAGCGCGAGGTAATAAAAGAGCGAGAGGCCACT CTAGAAGCAAACCGTGCCCTAAAACATCGCTTACGCAGACCCCGTGCACAGCGCAATACACAACGCAGTGTAACACCGCG CAGCACGCGGGAAAATAAAAATGTACAGAGAAATAAGGCAAGGTCTGCCAGGTGCAATGTACGGCATGAAAACTAA Protein sequence : MHRRSSKSYSSRNSKTPERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIWLAN LYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFRNGRAKLLISLARGKKLIDKREVIKEREAT LEANRALKHRLRRPRAQRNTQRSVTPRSTRENKNVQRNKARSARCNVRHEN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 3e-24 | 46 |
