Gene Information

Name : ECA0941 (ECA0941)
Accession : YP_049050.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : fimbrial chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1054020 - 1054769 bp
Length : 750 bp
Strand : -
Note : Similar to Proteus mirabilis chaperone protein PmfD SWALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 8.9e-43, 46.72% id in 229 aa, and to Escherichia coli sfpd SWALL:Q933Y4 (EMBL:AJ131667) (243 aa) fasta scores: E(): 8e-41, 44.93% id in 247 aa,

DNA sequence : 
ATGAAATACCCATCTTATCGGCGAGTAGCAGGATTCATCATCGGTTGCCTGTTTTTGATGCCATCGGCCTACAGCGCCCT
GAGCCTCGATCGCACCCGCGTTATTTTTAACGATGATGAGCAATCCGCGACAATCATGTTGATGAATCAAAACGCGGAGA
ACCCGTTTCTGGCGCAGTCGTGGCTGACAGACGAGCACCACAATAAGGTGAGCACACCACTAATGGTGCTACCGCCGTTA
CAGCGCATCGAAGCAAAAGGATATAGCCTGATCCGTCTGGTCAAAACCGAAAAAATCACCCAATTACCTACCGATCGCGA
ATCGCTGTTTTACCTTAACGTTCGGGAAATCCCCCCCAAAGCGGAAAAACCTAACGTACTACAGATAGCTATTCAGTCTG
AAATAAAGGTGTTCTTCCGCCCCCGTAGCGTAAAGCCAGCCAAAGACGAAATATGGCAGGAAAAACTGATCGTCAGAAAA
ACGGGAAACACCTTTCAGGTAGAGAACCCAACGCCGTACTACATCACGGTAAGCAGCATCCTGAAACAGCCCAAAGCGAC
GCGCGCCAACCCTACCAGCCTGCTGAAGGGGAATGCCTTTATGGTCGCGCCACGCTCAACCCTCTCGGTTGAGGTGAATG
ACAGTGCGGTCGATCGCTTCTATCTGTACTACGTGAATGACTACGGCGGCCATCTGGAGTTGCCTTTTACCTGCGCACAA
AACCAGTGTCAGCCCGTAATCCGTAAATAA

Protein sequence : 
MKYPSYRRVAGFIIGCLFLMPSAYSALSLDRTRVIFNDDEQSATIMLMNQNAENPFLAQSWLTDEHHNKVSTPLMVLPPL
QRIEAKGYSLIRLVKTEKITQLPTDRESLFYLNVREIPPKAEKPNVLQIAIQSEIKVFFRPRSVKPAKDEIWQEKLIVRK
TGNTFQVENPTPYYITVSSILKQPKATRANPTSLLKGNAFMVAPRSTLSVEVNDSAVDRFYLYYVNDYGGHLELPFTCAQ
NQCQPVIRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 4e-51 45
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 6e-48 43
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-47 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-47 43
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 1e-47 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 8e-48 43
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 8e-48 43
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECA0941 YP_049050.1 fimbrial chaperone VFG1547 Protein 4e-48 43
ECA0941 YP_049050.1 fimbrial chaperone VFG0896 Protein 4e-48 43
ECA0941 YP_049050.1 fimbrial chaperone VFG0885 Protein 6e-41 42