Gene Information

Name : ECA0835 (ECA0835)
Accession : YP_048945.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Unknown
Product : prophage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 925541 - 926821 bp
Length : 1281 bp
Strand : -
Note : Similar to Escherichia coli prophage cp4-57 integrase IntA SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 5.3e-93, 57.76% id in 393 aa, and to Yersinia pestis prophage cp4-57 integrase IntA SWALL:AAM86631 (EMBL:AE013909) (410 aa) fasta scores

DNA sequence : 
TTGGTATACGAATTGGTATACGAATTGGTATACGCTAAGATATATACCAATAAACGTATACCAATTAGGGAAGATCCTTG
CATGGCGCGGACTACACGCCCCCTCACCCACACCGAAGTACAAAAAGCCAAAGCCACCGATAAAGACCTCACCTTGCATG
ACGGTGACGGCCTCTTTCTCCTGGTCAAAACCACCGGTAAGAAAATTTGGCGCTTTCGCTACCAGGTGCCTGGCACTTCA
AAACGCACCATGATTAGCCTCGGCGCTTATCCTGCACTTTCACTGGCTGATGCCAGAGAAGTGCGCTCTGAGAAGCTTGC
GATATTAGTCAAAGGGATTGATCCACAAGCAAGAGCTGGGGAAGAAGCTGAGAAGCTCCAAATCGCTCAGGAAAGTATTT
TCGTTAATGTTGCACGTAAATGGTTCGAGCTGAAACAAAGTCACGTCAGCGCTGACCACGCTAAAGATATCTGGCGTTCT
ATTGAGAAAGACATCCTGCCCAGTATTGAAAATGTCCCCATTCAGGAGCTGAAAGCTCGCACTTTGATCCAGGTGTTGGA
ACCAATCAAAGCGCGGGGAGCATTAGAGACTGTTCGGCGTTTAGTACAACGCATAAACGAGATAATGATTTATGCCGTCA
ATGTTGGGTTGATTGAGGCAAATCCAGCTTCAGGTATCGGTAATGCTTTCGAGCGCCCTAAGAAGCAGCACATGCCCATA
ATACGCCCCGAAGAACTGCCCAAGTTGATGCGCACCATTTCAATGAGCAACTTGTCGATACCAACCCGCTGCCTGCTTGA
ATGGCAGTTACTGACGCTAATACGCCCTGCCGAAGCATCGGCAACAGCCTGGTCAGAGATCGATATAGAGAATAAGCAGT
GGTGTATTCCGGCAGAACGTATGAAGGCAAAGCGCGACCATATAGTCCCATTGTCAGAGCAAGCCTTAGAGTTGCTGGAA
ATCATGCGTCCTATTAGCGGCAATCGTCAGTACGTTTTCCCTAGCCGGAATGACCCGCGTAAGCCTATGAACAGTCAGAC
CGCCAATGCCGCGTTAAAACGTATTGGTTATAGTGGGAAACTTGTAGCTCATGGTTTACGCTCTATAGCAAGCACAGCTA
TGAATGAAGCAGGTTTTAATGCAGATGTTATTGAAGCGGCATTAGCGCATAGTGATAAGAACGAGGTTCGCAGGGCATAT
AATCGCTCGACCTACCTAACACAGCGGGTGGAGCTTCTTGGATGGTGGGGAGAGTTTGTGAACCGAACTCAAGTTATTTA
A

Protein sequence : 
MVYELVYELVYAKIYTNKRIPIREDPCMARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQVPGTS
KRTMISLGAYPALSLADAREVRSEKLAILVKGIDPQARAGEEAEKLQIAQESIFVNVARKWFELKQSHVSADHAKDIWRS
IEKDILPSIENVPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAVNVGLIEANPASGIGNAFERPKKQHMPI
IRPEELPKLMRTISMSNLSIPTRCLLEWQLLTLIRPAEASATAWSEIDIENKQWCIPAERMKAKRDHIVPLSEQALELLE
IMRPISGNRQYVFPSRNDPRKPMNSQTANAALKRIGYSGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDKNEVRRAY
NRSTYLTQRVELLGWWGEFVNRTQVI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-102 53
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 3e-100 50
int AAK20773.1 integrase Not tested VPI Protein 3e-100 50
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 3e-100 50
int AAK20803.1 integrase Not tested VPI Protein 3e-100 50
unnamed AAA82714.1 integrase Not tested VPI Protein 3e-100 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 8e-88 46
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-88 46
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 8e-88 46
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 9e-68 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 6e-68 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 9e-68 41
int ACU09430.1 integrase Not tested LEE Protein 6e-68 41
int AAD44730.1 Int Not tested SHI-2 Protein 9e-69 41
int CAC39282.1 integrase Not tested LPA Protein 2e-67 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECA0835 YP_048945.1 prophage integrase VFG1092 Protein 4e-88 46
ECA0835 YP_048945.1 prophage integrase VFG0783 Protein 4e-68 41