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Name : ECA0560 (ECA0560) Accession : YP_048676.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : plasmid transfer protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3505 EC number : - Position : 626208 - 628304 bp Length : 2097 bp Strand : + Note : Similar to Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 7.6e-30, 26.78% id in 687 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62159 (EMBL:AF440523) (729 aa) fasta scores: E(): DNA sequence : ATGAGCGATCGTTATGTCATTGAGGCATTGCTGCGGCCCGCTGTTGAACTGAACACTGCCGTAGTTTCGGCTACAGCAGC ATTTGTCTGTGTGCAGGCACCATGGGCGATTGCGTTGGCCCCTTCAGTCAGTTATGTGACGGCCGGTGGGTTCGCTGTTC TGGCCATGGTACGAACCCGCCAGGGAATGAAGGTACTGCGTTACCGTCGTAATTTACGACGCCTACCACGTTACGTGATG AGTAGTAAGCAGATCCCTGTAAGTAAACGGCGGTTGTTTATCGGTAAGGGATTTATGTGGACGCAGAAACACACCCAACG GCTGCGTGACACGTTACGTCCGGAGGTCGAGCGTTATATTCAGCCGCCAACCCTGTATCAGGCCGCCCGTAAACTAGAGA ATGCAGCAGAGCATAACTTGCCCTGGCTCACGAAACTACTGAGCGTAGATTCTCCTCTGAACCCAGTGCGCCCATTACCG CCCGTCGGTGGAAAGCCGGTACTACATGGTATTGAGCCTGATGAGGTTGATGTCACTATGCCACTGGCCGATCGCCCCGG TCATACCATCGTATTGGGTACGACTCGTGTTGGAAAAACACGGTTGGCCGAACTGTTTATTACCCAGGATATCCGCCGTG GTGATGTGACGATTGTCTTCGATCCAAAGGGTGACCCTGATTTATTACGTCGAGTCTGGGCTGAAGCGCACCGTGCCGGG CGAGGTGATTCGCTCTACATCTTCCATCTGGGTTGGCCCGAAATATCAGCTCGTTATAACGCCGTTGGACGGTTTGGGCG TGTCTCTGAAGTGGCGTCGCGTATCTCTGGGCAATTGGCGGGGGAAGGGAACAGTGCTGCATTTAAAGAGTTTGCGTGGC GTTTCGTAAATATTGTAGCCAGAGCACTGGTTGCATTGGGTGAGCGGCCTGACTACACGCTAATTATGCGTTACGTCAAT AATATTGCGGACCTGTATCTACGCTATGCTGAGAAAATCATTGAAGAGGAACTACCCGAGCTACAACTGCAGATACGCAA TAACTTAGGGGTATTCACTGATGAAGATGTTCCCCGAAATATGCAGGGCCAGCCTAATAGCGTTGGCATTTGGGCAATAG AGGTTGCGTTAAGCTCAGAGGCCGGTAAGAAACTCTATGATCCGATTTTGGATGGCTTGCGCTCTGCGGTTCGCTATGAC AGAACTTATTTCGACAAAATTGTTGCCTCTTTATTACCATTATTGGAGAAACTGACGACGGGTAAAACGGCGTCCCTGTT GTCGCCGGACTATCTGGATATGGATGACTCACGCCCCATTTTTGATTGGGAACAAATTGTTCGCAAACGAGGTGTTGTGT ATATCGGTCTGGACGCCCTTACAGACAGTGAAGTTGCTACGGCAGTGGGGAACAGCATGTTTGCCGATCTGGTTAGCGTG GCTGGCCATATTTATAAACATGGTATTAATGCTGGACTGCCACAGCAGAAAGAAGAAAAAGCCGTCATTAACCTGCATTG CGATGAGTTCAATGAGCTAATGGGTGATGAATTCATTCCGTTGATCAACAAAGGCGGTGGTGCTGGCGTTCAAGTGACCG CCTATACGCAAACTTCATCAGATATCGAGGCGCGTATCGGGAATGCTGCGAAAACGGCTCAGGTCATTGGTAACTTCAAT ACACTGATCATGCTGCGTGTCCGGGACAACAAAACTGCAGAATTGCTCACGACACAGCTGCCGCAGGTTGAGATCTACAG TAAAACGTTGGTTTCTGGTCACTCGGATACGGCTAATGTTGAGACTGGACAGGATTTTACATCCAGTACTCAGGATCGTG TTGGTACGATAAAAACCCCGTTGATTGAGCCGTCTGATGTCGTCAGCCTGCCTAAAGGCCAGGCGTTCGCCCTGCTTGAA GGTGGTCAGTTGTGGAAAATCAGGATGCCGCTGCCGACCAATGATATTGATGATGCGATGATGCCAGCAAACTTGCAGGC TGTGGCGACAGAAATGCGCCGTAACTATCATTCCAGTGAGGGATGGTGGAGCGGGCGTTCACTTACTGCTGCAGATCGGC AAGTGGGAGGTGAGTAG Protein sequence : MSDRYVIEALLRPAVELNTAVVSATAAFVCVQAPWAIALAPSVSYVTAGGFAVLAMVRTRQGMKVLRYRRNLRRLPRYVM SSKQIPVSKRRLFIGKGFMWTQKHTQRLRDTLRPEVERYIQPPTLYQAARKLENAAEHNLPWLTKLLSVDSPLNPVRPLP PVGGKPVLHGIEPDEVDVTMPLADRPGHTIVLGTTRVGKTRLAELFITQDIRRGDVTIVFDPKGDPDLLRRVWAEAHRAG RGDSLYIFHLGWPEISARYNAVGRFGRVSEVASRISGQLAGEGNSAAFKEFAWRFVNIVARALVALGERPDYTLIMRYVN NIADLYLRYAEKIIEEELPELQLQIRNNLGVFTDEDVPRNMQGQPNSVGIWAIEVALSSEAGKKLYDPILDGLRSAVRYD RTYFDKIVASLLPLLEKLTTGKTASLLSPDYLDMDDSRPIFDWEQIVRKRGVVYIGLDALTDSEVATAVGNSMFADLVSV AGHIYKHGINAGLPQQKEEKAVINLHCDEFNELMGDEFIPLINKGGGAGVQVTAYTQTSSDIEARIGNAAKTAQVIGNFN TLIMLRVRDNKTAELLTTQLPQVEIYSKTLVSGHSDTANVETGQDFTSSTQDRVGTIKTPLIEPSDVVSLPKGQAFALLE GGQLWKIRMPLPTNDIDDAMMPANLQAVATEMRRNYHSSEGWWSGRSLTAADRQVGGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 0.0 | 70 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 69 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 69 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 67 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 0.0 | 67 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 66 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 62 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 0.0 | 61 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 0.0 | 59 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 59 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 0.0 | 59 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 58 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 2e-133 | 47 |
