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Name : traF (ECA0549) Accession : YP_048665.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : plasmid transfer protein Function : - COG functional category : - COG ID : - EC number : - Position : 619034 - 620236 bp Length : 1203 bp Strand : + Note : Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, a DNA sequence : ATGAAACCTTCATTAATCACACGCAGTTTTATTATTGCGGGGATCAGTGCAGTTGCTGCTTCAGCTAACGCTGCAGGAAC ATGGACTGAAGCTCGTAACGACGCTATGGGTGGAACGGGAGTTGCGTCTTCACACTACAGTGCAGCGGCGTTGGTTAACC CTGCATTGCTGACAAAATTCGATAAATCCGATGATTTCAGCCTGATTTTACCTGCCGTGGGTGCTCAGGTCTCCGATCCG GATAATCTGCAGGATGGTGTCGATCGTATCGACAACGACTGGAAATCGTTTGAACGTGCTGTCAACGCAGGGGGGGATAC CAGCCTGTCGGCTGCCAAATTACGTGCATCATTGCAAGACTTGTCTGGTAGTCATGCGAAAGCGCATGCTGGCGCGTCAA CGGTCGCGGCAGTTCCTAACAGCGTTCTGCCATTTGCAGTTCTTGCAAAGGGATGGGGAACAGCCACAGTCAAGACCAAT GTGACAGATAGCGACCTCCAGTGGCTTGATGGGGTGTCAAACGGAACAGCCAACGGCTCTGACCTGAGTTCATTAACGTC ATCCGCTAATGGCCGTGCAGCTGTCGTTGCGGACGTGGGCGTTGCGATGGCACGTGAATTCAACGTCGGCGGATTCGAGT TCTCTGCCGGTATTACACCGAAGGTGCAGCGCGTCTATACATTCAATTACAACGTTGCGATCAATAAATACGACAGTTCG GATTTCCGTAGTAGCGATTATCGTAACGATAAAACGGGCGCCAACGTAGATGTGGGTTTTGCAACCAACCTGAGTGATAA CTGGATTGTTGGTCTTGTCGGTCAGAACCTGGTTGCTCGCAGTATCGAGACGAAAGAAGTCAACGGCGTCAAAGATACGT TCAAAATTAAGCCTCAGGCAACGCTGGGAACCGCATACAGCAACGGTTTCTTTACTACAGCTCTCGATGTCGATCTGACT CCTGCTAGCCGTTTTAACTCCGACAAAGATAGCCAATTCGTTAGTGTAGGTGGCGAGTTGAATGCCTGGAAATGGGCGCA ACTGCGGGCAGGCTATCGTACTGATATTCATGACAGCGATAACTCTTATTTCACTGCTGGCATTGGCTTGTCCCCGTTTG ATGTTGTGCATCTTGATATCACCGGCATGGCAGGAACAGACAGAACGTATGGTGCAGTCGCGCAACTGACGTTTACATTC TGA Protein sequence : MKPSLITRSFIIAGISAVAASANAAGTWTEARNDAMGGTGVASSHYSAAALVNPALLTKFDKSDDFSLILPAVGAQVSDP DNLQDGVDRIDNDWKSFERAVNAGGDTSLSAAKLRASLQDLSGSHAKAHAGASTVAAVPNSVLPFAVLAKGWGTATVKTN VTDSDLQWLDGVSNGTANGSDLSSLTSSANGRAAVVADVGVAMAREFNVGGFEFSAGITPKVQRVYTFNYNVAINKYDSS DFRSSDYRNDKTGANVDVGFATNLSDNWIVGLVGQNLVARSIETKEVNGVKDTFKIKPQATLGTAYSNGFFTTALDVDLT PASRFNSDKDSQFVSVGGELNAWKWAQLRAGYRTDIHDSDNSYFTAGIGLSPFDVVHLDITGMAGTDRTYGAVAQLTFTF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAK00459.1 | unknown | Not tested | SHI-1 | Protein | 6e-69 | 54 |
