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Name : topB (ECA0525) Accession : YP_048644.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 599597 - 601615 bp Length : 2019 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : ATGATGCGACTTTTTCTTTGTGAAAAGCCGAGCCAGGGGCGAGATATCGCCCGTTTTATCGGTGCAACTCAACGAGGGAA AGGTTTTTTATCAGGCACCGGAACTGTCGTAACTTGGGCGTTTGGGCATCTTCTGGAAGTCGCCTCACCTGAAGAATACG GTGCTCAGTTCGGCAAACCCTGGCGTATGGATGTTCTACCTATTCTGCCAACAGAGTGGAAAATGGTTGTTAAGCAAAGT TCTGCTGATCAATTCGCTGTAATTAGTCGATTACTGAAACAGGCAGATGAAGTTGTTATTGCGACAGATGCCGATAGAGA AGGAGAAGTACTGGCGAGAGAGCTATTGGATTATTGTCATTTTACTGGGAATGTAAAACGTCTGTGGCTTAGTGCTCTTG ACGATGCCAGCATCCGAAAGGGATTAGATAACCTTCTCCCAGGCGAGAAAACAGTTCGTCTTTATTATGCTGGCATGGGG CGTAGCAAGGCTGACTGGCTGATTGGTATGAATTTAACTCGAATATATACCCTTAAAGCTTCAGAACAAGGTATCGATGA GCTGTTGTCTATAGGACGAGTTCAAACCCCAACACTGGCGCTTGTTGTCCAGAGAGATAGCGATATTGAGAATTTCTCTC CTAAGCCCTACTGGCAGGTGTTTGCTGATATTGAAAAAGCCGGAATGACCTTTAGAGCTCAATGGGTACCAGCTGCTGGA TATTGCGATGATGAAAAGCGCTGTATTCAGCATAATGCAGCCCTTGCAGTGGAGCAGCTCTGCAAGCAAACAGCAACAAC ATCTGTCGTTGATGTGTTACTTAAGAGAGAAAAAACGCCAGCGCCGTTATGCTTTAGCTTGAGCGTGTTGCAGAAAGCCT GTTCTGATAAATGGGGAATGATCGCCCAGAAGGTATTAGAAATCGCTCAGTCACTTTATGAGGTTCACAAAGCGACGACT TATCCCAGAACTGATTGTGGATACTTGCCTGAGTCCATGAAAGGGGAGGTGAGCGATGTGCTTTCCGCTATTTTACAGTC AGATCCTGCCGCCACATCACTTATTAAAGATGCTGATCGTTCTTTTGTTTCCCGTATCTGGAATGACAAAAAAATTTCTG CTCACCATGCAATTATTCCTACGAAACAACCCTTCGATATAAGCAAATTATCAGATGATGAGTTGAATGTTTATCAACTC ATTCGTCTGCATTATTTTGCTCAGTTTTTTCCTCTCCATGAGTCCGATGTTACAGATGTTACATTTAATTTAGGTGGGCA ACTATTTAAAACTCGAGGTAGGGTGAGTGTCGTTATTGGATGGAAGAAACTCTTTTTCAATGATAAAGAGCCCGATATTC AATCTGATGAAAATGGAAGTCAAGGGAGCCTTCCTGTTTTACATAACGGTGATATTTGTAATGTATTGGATTGTGAAGTT AAAGCCCAACAGACTAAACCGCCATCTCGATTTACTGATGGCACATTGATTGATGCAATGAAGAATTCAGCTAGTTTTAT TAGTGATCCGACATTAAAGAAAATTTTACGTGATAATGCGGGGCTGGGTACCGAGGCTACTCGTGCAAATATATTAGATG TACTATTTAAGCGTAATTACCTAAAACGGCGTGAAAAGTTCATTTATTCAACGCAGCTGGCCAGAGAGCTAATCTCTCAA TTACCAGAGGCTCTAACTAATCCAGGCATGACAGCGCTTTGGGAACAGGCATTGGATGATGTTGCTGAAGGACGCATGTC GTTGGATGCATTTTTACAAAAGCAAAAAGAATGGACATTAAGATTAGTAGATAGGGGGCGTCAACAAGCGATTAAGTTGA CGGCACCAGTCTCTCCATTGTGTCCCCAGTGTGGTGGGATAATGAGAAAAAGAAACAGTGATAATGGTGTGTTTTGGGGG TGTGTGAAGTACCCGCTCTGTAAAGGGATCATTAGCGAAGGGACAAAAGGTAAGAGGGGTAAGAAAAATCTGAAAACTAA GAATAAACCAGCTACCTGA Protein sequence : MMRLFLCEKPSQGRDIARFIGATQRGKGFLSGTGTVVTWAFGHLLEVASPEEYGAQFGKPWRMDVLPILPTEWKMVVKQS SADQFAVISRLLKQADEVVIATDADREGEVLARELLDYCHFTGNVKRLWLSALDDASIRKGLDNLLPGEKTVRLYYAGMG RSKADWLIGMNLTRIYTLKASEQGIDELLSIGRVQTPTLALVVQRDSDIENFSPKPYWQVFADIEKAGMTFRAQWVPAAG YCDDEKRCIQHNAALAVEQLCKQTATTSVVDVLLKREKTPAPLCFSLSVLQKACSDKWGMIAQKVLEIAQSLYEVHKATT YPRTDCGYLPESMKGEVSDVLSAILQSDPAATSLIKDADRSFVSRIWNDKKISAHHAIIPTKQPFDISKLSDDELNVYQL IRLHYFAQFFPLHESDVTDVTFNLGGQLFKTRGRVSVVIGWKKLFFNDKEPDIQSDENGSQGSLPVLHNGDICNVLDCEV KAQQTKPPSRFTDGTLIDAMKNSASFISDPTLKKILRDNAGLGTEATRANILDVLFKRNYLKRREKFIYSTQLARELISQ LPEALTNPGMTALWEQALDDVAEGRMSLDAFLQKQKEWTLRLVDRGRQQAIKLTAPVSPLCPQCGGIMRKRNSDNGVFWG CVKYPLCKGIISEGTKGKRGKKNLKTKNKPAT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 62 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 62 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 0.0 | 62 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 0.0 | 55 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 8e-159 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-151 | 49 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 1e-158 | 47 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 6e-154 | 47 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 6e-127 | 42 |
