Gene Information

Name : ECA0045 (ECA0045)
Accession : YP_048174.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : virulence-associated outer membrane protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3637
EC number : -
Position : 55765 - 56313 bp
Length : 549 bp
Strand : +
Note : Similar to Salmonella typhimurium resistance to complement killing Rck or pslt009 SWALL:Q04817 (EMBL:L08613) (185 aa) fasta scores: E(): 7.9e-27, 44.68% id in 188 aa, and to Salmonella typhimurium virulence membrane protein PagC precursor or stm1246 SWALL

DNA sequence : 
ATGAAAAAAACAACGCTGCTGCTTTCCACTCTGATTACTTGTGCCATGGGAATATCTGTTGCTCAGGCGACACAAACGGT
GTCATTGGGCTATGCTCAGGCGAAAGTCGAAGATTTTAAAGATCTGAAAGGGGTTACGGCCAAGTACCATTATCAGGGTG
ATTCTGCACTGGGTATTATTGGTTCTTTTACCTATCTGGGCGGTAAAAAAGATTACAACCAGAGTAGTATTGGATTCAGC
TCACACGAGAGCGACGATGTTAAATACTATTCACTAATGGTTGGACCTTCCTACCAAATTAATGATGTCGTGAGTATTTA
TGGGCTTGCTGGTTTAGGCCATGCTAAAGTAAAAAACTCGTATAACTATACATTGCCCAATCAATCAGGCAGTGAAAGCT
ACAGTGAAAGTAAAACCAAATTTGCTTACGGTGCCGGTATTCAAATTACACCAGTAGCAAACTGGGCGATTGATATTGGC
TACGAAGGCACAAAAATCTATGAAGCCCGTGTAGACGGCTTTAATATTGGTGTCGGTTATCGTTTCTGA

Protein sequence : 
MKKTTLLLSTLITCAMGISVAQATQTVSLGYAQAKVEDFKDLKGVTAKYHYQGDSALGIIGSFTYLGGKKDYNQSSIGFS
SHESDDVKYYSLMVGPSYQINDVVSIYGLAGLGHAKVKNSYNYTLPNQSGSESYSESKTKFAYGAGIQITPVANWAIDIG
YEGTKIYEARVDGFNIGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pagC YP_216243.1 PhoP regulated protein: reduced macrophage survival Not tested SPI-11 Protein 1e-28 44
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 8e-28 43
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 7e-27 42
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 5e-28 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECA0045 YP_048174.1 virulence-associated outer membrane protein VFG0442 Protein 2e-30 44