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Name : tex (ECA4122) Accession : YP_052209.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : RNA binding protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 4597892 - 4600225 bp Length : 2334 bp Strand : + Note : Similar to Bordetella pertussis Tex protein WALL:TEX_BORPE (SWALL:Q45388) (791 aa) fasta scores: E(): 1.7e-165, 60.15% id in 783 aa, and to Salmonella typhi transcription accessory protein sty4292 SWALL:Q8Z218 (EMBL:AL627281) (776 aa) fasta scores: E(): 0 DNA sequence : ATGAATGATTCATTAAGCCAACTTATCGCCCGCGAATTGCAGGCGCGCACGGAGCAGGTAGACGCCGCTGTTCGCCTGCT GGACGAAGGAAATACCGTCCCTTTTATCTCCCGTTACCGTAAAGAAGTGACCGGCGGGCTGGATGACACCCAATTGCGCC AGCTCGAAACACGTCTCGGTTACCTGCGTGAGCTGGAAGATCGGCGCCAGACTATTCTGAAATCCATCGACGAGCAGGGG AAGTTAACCGCACAGCTCGCCACCGCGATTAACGGCACGCTGAGCAAAACCGAGCTGGAAGATCTCTACCTGCCGTATAA ACCTAAGCGCCGCACGCGCGGACAAATCGCGATTGAAGCCGGTCTGGAACCGCTGGCTAACGGCTTGTGGCAAGACCCAA GTCAGGAGCCGGAGCTGACGGCACAGGCTTATGTCGATGCCGAGAAAGGCGTGGCAGACGTGAAGGCCGCGCTGGACGGC GCACGTTACATCCTGATGGAACGCTTTGCCGAAGATGCAACACTACTGGCAAAAGTGCGTAATTATCTGTGGAAAAACGC GCATCTGGTTTCCCGCGTCGTAGAAGGGAAAGAAGAAGAAGGTGCGAAGTTCCGCGACTATTTCGATCATCACGAACCGA TTACTTTGGTCCCTTCACACCGCGCTCTGGCGATGTTTCGTGGACGCAATGAAGGCGTGCTGCAACTGGCATTGAATGCC GACCCGCAGCACGAAGAAGCACCGCGTGAGAGCTACTGCGAACAGATTATTATCGACCATCTGAATCTGCGGCTAGGCAA TGCGGCAGCAGATAGCTGGCGACGCGCCGTCATTAGCTGGACGTGGCGCATCAAGGTGTTGCTGCACCTTGAAACCGAAC TGATGGGCAGCGTGCGTGAAAAGGCCGAGGACGAAGCGATCAACGTCTTCGCCCGCAATATGCACGACCTGCTGATGGCT GCCCCTGCGGGCATGCGCGCCACCATGGGTCTCGATCCGGGTCTGCGTACTGGCGTAAAAGTCGCGGTGGTCGATGCCAC CGGCAAGCTGGTCGCGACCGATACCATTTATCCGCATACCGGTCAGGCCGCGAAAGCCGCTCCGATTGTGGCCGCACTGT GCCTCAAATATCAGGTTGAGCTGGTGGCGATTGGCAATGGGACTGCCTCGCGTGAAACCGAGCGTTTCTTCCTCGACACA CAGAAACAGTTCCCAGATATCAACGCGCAGAAAGTGATCGTCAGTGAAGCGGGCGCATCGGTGTACTCCGCATCGGAACT GGCGGCGCTGGAATTCCCCGATCTGGATGTGTCACTGCGCGGCGCGGTATCTATCGCCCGTCGTTTGCAGGATCCGCTGG CGGAATTGGTGAAGATCGATCCGAAGTCCATCGGTGTTGGCCAGTACCAGCATGACGTGAGCCAGAGCCAGCTCGCGAAG AAACTGGATGCGGTGGTCGAGGACTGCGTAAACGCCGTCGGCGTTGACCTGAATACCGCGTCCGTAGCGCTGTTAACACG TGTTGCAGGGCTGACGCGTATGATGGCGCAGAATATCGTGACCTGGCGCGATGAGAATGGTCGTTTCCACAACCGCGAAC AACTGCTGAAAGTCAGCCGTCTGGGGCCAAAAGCCTTTGAACAGTGCGCGGGCTTCCTGCGCATCAACCACGGCAATAAC CCACTGGATGCCTCTACCGTTCACCCGGAAGCCTATCCGATCGTGGAACGTATTCTGGCTGCGACCGAACAGGCGTTGCA GGAGTTAATGGGGAATCCAACTGCGCTGCGTAACCTGAAACCATCGGATTTTACCGATGAACGTTTCGGCGTGCCGACGG TGACTGACATCATCAAAGAGCTGGAAAAACCGGGTCGCGATCCCCGTCCTGAATTCAAAACGGCTAGCTTCGCCGATGGC GTAGAAACCTTAAAAGATCTGCTACCGGGCATGGTTCTGGAAGGTGCGGTCACCAACGTCACCAACTTTGGTGCGTTTGT GGATATCGGTGTCCATCAGGACGGCTTGGTTCACATTTCATCACTGGCCGATCATTTCGTCGACGATCCACATAAAGTGG TGAAAGCTGGCGACATCGTAAAAGTGAAAGTGATGGAAGTCGATTTGCAACGTAAGCGCATCGCGCTGACTATGCGGCTT GATGAACAGCCGGGCGACACCGCATCACGCCGTGGCGGTGGTAATACACGTGCGGATAACACGACTTCGCTGCGTCAGCC AGCCGGTAAATCACGCCCACGTCCGGCCAGCGCACCAACCTCAGGCAATAGCGCAATGGGCGATGCTCTGGCCGCCGCCC TTAAAAAACGTTAA Protein sequence : MNDSLSQLIARELQARTEQVDAAVRLLDEGNTVPFISRYRKEVTGGLDDTQLRQLETRLGYLRELEDRRQTILKSIDEQG KLTAQLATAINGTLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLANGLWQDPSQEPELTAQAYVDAEKGVADVKAALDG ARYILMERFAEDATLLAKVRNYLWKNAHLVSRVVEGKEEEGAKFRDYFDHHEPITLVPSHRALAMFRGRNEGVLQLALNA DPQHEEAPRESYCEQIIIDHLNLRLGNAAADSWRRAVISWTWRIKVLLHLETELMGSVREKAEDEAINVFARNMHDLLMA APAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAPIVAALCLKYQVELVAIGNGTASRETERFFLDT QKQFPDINAQKVIVSEAGASVYSASELAALEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQSQLAK KLDAVVEDCVNAVGVDLNTASVALLTRVAGLTRMMAQNIVTWRDENGRFHNREQLLKVSRLGPKAFEQCAGFLRINHGNN PLDASTVHPEAYPIVERILAATEQALQELMGNPTALRNLKPSDFTDERFGVPTVTDIIKELEKPGRDPRPEFKTASFADG VETLKDLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQRKRIALTMRL DEQPGDTASRRGGGNTRADNTTSLRQPAGKSRPRPASAPTSGNSAMGDALAAALKKR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 60 |
