Gene Information

Name : pmrA (ECA4044)
Accession : YP_052131.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator BasR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4510929 - 4511597 bp
Length : 669 bp
Strand : +
Note : response regulator in two-component regulatory system with BasS

DNA sequence : 
ATGAAATTATTGATTGTTGAAGACGATAAGCTGTTGCAGGAAGGATTATTATTGGCACTGAGTCATGAAGGTTATGCCTG
CGATTGCGCAGGCACGGCCAAAGAAGCGGACGCGCTCATCAACAGCGCGCACTATAGTCTGGTGATTCTCGATCTTGGTT
TACCGGACGACGACGGGCTCGCGTTGTTATCACGCTGGCGTAAGAATAATTACCAACATCCCGTACTCATCTTAACGGCA
CGGGACAAGGTCAACGATCGCGTCAGCGGGTTGGATGTCGGTGCAGACGATTATCTCGCCAAGCCTTTTGCACTGACGGA
ATTACAGGCGCGCGTACGCGCGCTGATTCGCCGCAATCAGGGATCGAGTAACAGCAAGATACAGGTCGACAACATTACGC
TGGATTTAAACAACCAGCAGGTATTGTTGGACGAAAAGCCGGTGGTACTGACGCCGAAAGAGTTCGCGATACTTTCCCGC
TTGATGCTGAAAGCCGGTTCTCAGGTACACCGAGAGCTTCTGCATCAGGATATTTATGCCTGGAACGACGACCCGTCCTC
GAATTCGCTTGAGGTACATATCCACAACCTGCGTCAAAAGATAGGCAAAGACCGTATCCGGACCCTGCGAGGCTTTGGCT
ACCTGCTGACCAAAGGGGAACAACCATGA

Protein sequence : 
MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALINSAHYSLVILDLGLPDDDGLALLSRWRKNNYQHPVLILTA
RDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQGSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSR
LMLKAGSQVHRELLHQDIYAWNDDPSSNSLEVHIHNLRQKIGKDRIRTLRGFGYLLTKGEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_052131.1 DNA-binding transcriptional regulator BasR BAC0487 Protein 6e-84 99
pmrA YP_052131.1 DNA-binding transcriptional regulator BasR NC_002516.2.879194.p Protein 2e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_052131.1 DNA-binding transcriptional regulator BasR VFG0473 Protein 4e-60 62