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Name : hofB (ECA3799) Accession : YP_051888.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4246629 - 4248101 bp Length : 1473 bp Strand : + Note : Similar to Escherichia coli protein transport protein HofB or HopB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 3.2e-77, 51.06% id in 470 aa DNA sequence : ATGACGGATTCTTCCTTCTCCTCCGAGCATACGCTCAGCGAGTTACAAACACTGTGCCGACGTTATCAGGCATTGCTGCT TAACCTCGATGAACAAACGCTGTCGGTCGCCGTCACGACGTCCCCTTCTGCGGAGATGATTGCCGCGCTGCGTTTCGCCA GCAATCGCCGAATTATGGTGGAACAATGGCCACAGGCCAGAATGGAACAACAGCTTAATCCGGTGAATGCCGTTGCCGAG CCAGCAGAGACTTACCATGCCAGCACCGATCGCTCCAGCACTGGGCAACAGGATCAGGATGACGCCTCCCCCGTCGCGCA ATTTATCCATCAAACGCTGCGCCTCGCCGTTCAGCGCCGCGCCTCTGATATCCACTTTGAGCCGCTGTCAGACAGCTATC GTGTGCGGCTACGGATTGACGGTGTGTTGCAGTCAATATCCGCGCCCCCTCCCGAGCTGACAAACCGAATTACCGCGCGG CTGAAAATCATGGGCAAGTTGAATATTGCCGAAAGGCGATTACCGCAAGACGGTCAATTCAGCCTGATGCTGGATCAACA GCCCTACTCGTTACGCATCGCTACCCTCCCCGTGCAGCAAGGAGAAAAAGTCGTACTGCGTATTTTGCAGACGCACCAGC AAGAGTTGGCGCTGGATAAGCTCGGGCTCACCGCAAAGGCATTACAGCAGGTTATTAGCGTGCTGAGCGCCGCACAGGGG ATGATGCTCGTCACTGGCCCAACAGGCAGTGGAAAAACGGTGACACTTTACAGTGCGATACGCTGGCTGAACGATAGCAG CCGCAATATCTGTAGCGTAGAAGATCCGGTCGAAATCCCCTTACAGGGAATCAACCAAACAGCCATCAATCCTAAAGCCG AGCTGGGATTTGGCCGAATCTTACGTGCGCTGCTGCGACAGGATCCGGACGTCATTATGATTGGTGAAATTCGCGATACC GAAACCGCAGAAATTGCGGTAAAGGCCGCACAAACTGGCCATCTGGTCATGTCCACGTTACATACCAATTCTGCCGTAGA AACCCTGACTCGCCTCAGTCATCTGGGTATCCCCGGCTATCTGTTAGCCGCAGCACTAAAGCTCATCGTCGCACAGCGTC TTGTACGTCGATTATGCCCGCACTGTAAAACCCAGGGAGAACCACTACTCTCACTGCCAAACGACGTATGGCGAGGGCCA TTACACCATTGGCAAGCTCACGGCTGTAGCCACTGTTTCTCTGGCTACTATGGCCGTGTCGCGCTCTATGAATTACTGCC CATCACGCCGGATTTTCAGGCAGCGTTAGCGGGCAACGCCAGCGTAGGGGAATTATCCGTTCTGTCACGTAACTCAGGTT TCCCAACGTTGCTGGCTGCAGGGCTGGAGCTGGTTAACGACGGTATGACCTCGCTTGCTGAAGTCTATCGAGTTGTTGGT GATGAGTGGTCGATGAATCAGGAGGCGCAATGA Protein sequence : MTDSSFSSEHTLSELQTLCRRYQALLLNLDEQTLSVAVTTSPSAEMIAALRFASNRRIMVEQWPQARMEQQLNPVNAVAE PAETYHASTDRSSTGQQDQDDASPVAQFIHQTLRLAVQRRASDIHFEPLSDSYRVRLRIDGVLQSISAPPPELTNRITAR LKIMGKLNIAERRLPQDGQFSLMLDQQPYSLRIATLPVQQGEKVVLRILQTHQQELALDKLGLTAKALQQVISVLSAAQG MMLVTGPTGSGKTVTLYSAIRWLNDSSRNICSVEDPVEIPLQGINQTAINPKAELGFGRILRALLRQDPDVIMIGEIRDT ETAEIAVKAAQTGHLVMSTLHTNSAVETLTRLSHLGIPGYLLAAALKLIVAQRLVRRLCPHCKTQGEPLLSLPNDVWRGP LHHWQAHGCSHCFSGYYGRVALYELLPITPDFQAALAGNASVGELSVLSRNSGFPTLLAAGLELVNDGMTSLAEVYRVVG DEWSMNQEAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-72 | 43 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-72 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_051888.1 | hypothetical protein | VFG0112 | Protein | 7e-90 | 48 |
| hofB | YP_051888.1 | hypothetical protein | VFG2426 | Protein | 1e-81 | 46 |
| hofB | YP_051888.1 | hypothetical protein | VFG2048 | Protein | 3e-74 | 44 |
| hofB | YP_051888.1 | hypothetical protein | VFG0182 | Protein | 9e-77 | 44 |
| hofB | YP_051888.1 | hypothetical protein | VFG1876 | Protein | 2e-76 | 42 |
