|
Name : dnaB (ECA3664) Accession : YP_051752.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 4114440 - 4115846 bp Length : 1407 bp Strand : + Note : unwinds double stranded DNA DNA sequence : ATGGCAGAGAAAAGACCCACCAATAAATCGAATGAGCCCCGTGACCGCCAGATGGAAGGTCTGAAACTTCCGCCACATTC GCTGGAAGCGGAGCAATCGGTATTGGGTGGCCTGATGCTCGACAATGAGCGCTGGGATAATGTCGCCGAGCGTGTTGTCG CTAACGACTTCTATAACCGTGCCCACCGCCTGATCTTCACCGAAATGCATCGTTTGCTGGAAATGAGCAAACCGATCGAC CTGATTACGTTATCCGAGTCGCTCGAACTGCAAGGCTCATTGGAATCCGCCGGTGGCTTCGCTTACCTGGCTGAATTGGC AAAAAACACGCCGAGCGCCGCCAACATTGGTGCCTACGCTGACATCGTGCGCGAGCGCGCCGTGGTGCGTGAAATGATCT CCGTCGCCAATGAGATCGCCGATGCGGGCTACGATCCGCAAGGCCGCAGCAGCGAAGATCTACTCGATCTGGCGGAATCT CGCGTATTCCAGATCGCAGAAAACCGTGCCAGCAAAGATGAAGGCCCAAAAAGCATCGACCGCATTCTGGAAGATACCGT CTCCCGTATCGAGCAGCTTTACCAGAAGCCGCATGATGGTGTTACAGGTGTGGATACGGGCTATCAGGATCTCAACAAAA AAACCGCCGGTTTGCAGAAATCTGACTTAATCATCGTGGCAGCGCGTCCATCAATGGGGAAAACCACCTTTGCGATGAAC CTGTGTGAACATGCTGCCATGACCCAAGAAAAGCCTGTGTTGATATTTAGTCTGGAAATGCCCGGCGAACAGATCATGAT GCGTATGCTCGCGTCTCTGTCTCGCGTGGATCAGACCCGCATCCGTACGGGTCAGTTGGACGATGAAGACTGGGCGCGTA TTTCCAGTACCATGGGAATCCTGCTGGAAAAGCGCAACATGTACATTGATGACTCCTCCGGCCTGACGCCAACCGACGTT CGTTCCCGCGCCCGCCGCGTGTTCCGTGAACATGATGGCCTGAGCATGATCATGATCGACTACCTGCAATTGATGCGTGT GCCGTCACTGTCGGATAACCGTACGCTGGAAATCGCAGAAATATCTCGCTCGCTCAAAGCGCTGGCAAAAGAATTGCAGG TTCCTGTCGTCGCCTTGTCGCAGCTTAACCGTAGTCTGGAACAGCGCGCCGATAAGCGTCCGGTCAACTCGGATCTGCGT GAATCCGGCTCCATCGAGCAGGACGCCGACCTGATTATGTTTATCTACCGTGATGAGGTTTATCACGAGAACAGCGACCT GAAAGGCATCGCTGAAATCATTCTGGGGAAACAGCGTAACGGCCCGATTGGTTCCGTTCGTTTAACCTTTAACGGGCAGT GGTCGCGCTTTGATAACTATGCCGGCCCACAATATGACGATGAATAA Protein sequence : MAEKRPTNKSNEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVAERVVANDFYNRAHRLIFTEMHRLLEMSKPID LITLSESLELQGSLESAGGFAYLAELAKNTPSAANIGAYADIVRERAVVREMISVANEIADAGYDPQGRSSEDLLDLAES RVFQIAENRASKDEGPKSIDRILEDTVSRIEQLYQKPHDGVTGVDTGYQDLNKKTAGLQKSDLIIVAARPSMGKTTFAMN LCEHAAMTQEKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGILLEKRNMYIDDSSGLTPTDV RSRARRVFREHDGLSMIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLR ESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIILGKQRNGPIGSVRLTFNGQWSRFDNYAGPQYDDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 2e-92 | 53 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 6e-98 | 52 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 2e-97 | 52 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 7e-97 | 52 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 4e-95 | 49 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-83 | 49 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-83 | 49 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 3e-81 | 47 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 9e-76 | 47 |
