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Name : outD (ECA3109) Accession : YP_051199.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3468183 - 3470135 bp Length : 1953 bp Strand : - Note : Similar to Erwinia carotovora general secretion pathway protein D precursor OutD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 3e-215, 92.76% id in 650 aa, and to Klebsiella pneumoniae general secretion pathway protein D precursor PulD SWALL DNA sequence : ATGTTGTTGCTCGGTGGTAGTATTTTGTTGATGGCGTCATCATTGGCGTGGAGTGCCGAATTCTCAGCCAGTTTTAAGGG CACGGATATTCAGGAGTTTATCAATACCGTCAGTAAGAATCTGAATAAGACGGTGATTATCGATCCATCGGTCAGCGGAA CAATTACCGTACGCAGCTATGACATGATGAACGAAGATCAGTATTACCAGTTCTTCCTGAGCGTGTTGGATGTCTATGGA TTCACGGTTATTCCGATGGATAACAATGTCCTGAAAATTATTCGCTCGAAGGATGCGAAATCGACATCCATGCCGTTGGC GAGTGATGAGCAGCCGGGTATCGGTGATGAAGTCGTCACGCGCGTCGTGCCAGTCAACAACGTGGCGGCTCGCGATTTGG CACCTCTGCTGCGCCAGTTGAACGACAACGCGGGGGCTGGGAGCGTGGTGCATTACGAACCCTCGAACGTGCTGTTGATG ACCGGCCGCGCGGGTGTGATCAAGCGGCTGATGACGATTGTGGAACGGGTTGATAAGACCGGCGATCGGAATGTGACGAG CATTCCGCTGTCTTATGCCTCTTCGCTGGAAGTGGTGAAGATGGTGAATGAACTGAACAAGATGGATGAGAAATCTGCCT TGCCGGGTATGTTGACCGCCAATGTGGTGGCCGACGAAAGAACCAACTCGGTGCTGGTGCGCGGAGAGCCGAATTCACGC CAGCGCGTTATCGATATGATCAAGCAGCTCGATCGCCAGCAGGCGGTACAGGGCAATACCAAAGTCATCTATCTCAAATA CGCCAAGGCCACCGATCTGGTTGAAGTGCTCACGGGAGTAGGCGACAGTATCCAAACCGACCAACAAAATGCGTTGCCCG CGCTGCGCAAAGACATTTCGATTAAGGCACACGAACAAACCAACTCGCTGATTGTGAATGCGGCACCTGACATCATGCGC GATCTGGAACAGGTGATTGCACAGCTGGATATCCGTCGTCCGCAGGTATTGGTCGAAGCGATCATCGCGGAAGTGCAAGA TGCCGATGGGATGAACCTGGGCGTTCAATGGGCGAATAAAAATGCTGGGGTGACACAGTTCACGAATACGGGGTTACCGA TCACGACAATGATGGCGGGAGCGGACCAGTTTCGGCGTGATGGAACGCTTGGCACGGCTGCGACGAGTGCACTGGGCAGC TTCAACGGGATTGCCGCCGGTTTCTATCAGGGCAACTGGAGCATGCTGATGACGGCACTCTCCAGCAACAGCAAGAACGA TATTCTGGCAACGCCGAGTATTGTGACGCTGGACAATATGGAAGCGACGTTTAACGTTGGTCAGGAAGTGCCTGTATTAG CGGGTTCACAGACGACATCCGGTGACAACGTTTTCCAAACGGTTGAACGTAAAACGGTCGGTATCAAACTGAAGGTGAAA CCGCAAATCAACGAAGGCGACTCCGTTCTGCTGGAAATCGAGCAGGAAGTCTCCAGCGTGGCTGATGCTGCCTCCAGCAG CAGCACCAATCTTGGGGCAACATTCAACACACGTACCGTCAATAACGCGGTGCTGGTCAGCAGCGGCGAAACCGTCGTAG TGGGGGGCTTGCTGGATAAAAGTACGAATGAGTCCGCCAGTAAAGTGCCTTTCTTGGGCGATATTCCGATTCTGGGGCAT TTGTTCCGTTCAAACAGTCAGGAAACGAAAAAGCGTAACCTGATGTTGTTTATCCGTCCTTCTATTATCCGCGATCGTAG CCAATATCAGAGTGCCTCTGCCAGTAAATATCACTCATTCAGCAATGAAGAACAGAAACAGAGAAACGTAAATAGCGGTG ATGGCGGGCTTCTGGATAACGATTTGCTGCGCCTGCCAGAGGGTGGGAACGCTTATACGTTCCGTCAGGTCCAGTCCTCT ATTGTGGCGTTCTATCCGGCGGGCGGGAAATGA Protein sequence : MLLLGGSILLMASSLAWSAEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVSGTITVRSYDMMNEDQYYQFFLSVLDVYG FTVIPMDNNVLKIIRSKDAKSTSMPLASDEQPGIGDEVVTRVVPVNNVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLM TGRAGVIKRLMTIVERVDKTGDRNVTSIPLSYASSLEVVKMVNELNKMDEKSALPGMLTANVVADERTNSVLVRGEPNSR QRVIDMIKQLDRQQAVQGNTKVIYLKYAKATDLVEVLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMR DLEQVIAQLDIRRPQVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATSALGS FNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVK PQINEGDSVLLEIEQEVSSVADAASSSSTNLGATFNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGH LFRSNSQETKKRNLMLFIRPSIIRDRSQYQSASASKYHSFSNEEQKQRNVNSGDGGLLDNDLLRLPEGGNAYTFRQVQSS IVAFYPAGGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-118 | 45 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 6e-127 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| outD | YP_051199.1 | general secretion pathway protein D | VFG2047 | Protein | 3e-117 | 43 |
