Gene Information

Name : ECA2860 (ECA2860)
Accession : YP_050951.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 3199575 - 3200462 bp
Length : 888 bp
Strand : -
Note : Similar to Shigella flexneri 2a hypothetical 32.4 kDa protein SWALL:Q93F04 (EMBL:AF326777) (290 aa) fasta scores: E(): 3.4e-37, 43.43% id in 297 aa, and to Escherichia coli hypothetical 32.5 kDa protein SWALL:Q8RLA4 (EMBL:AY082443) (290 aa) fasta scores:

DNA sequence :
ATGAAAAAATCGTCAGGTTATTCCCTGATCCGCCGCCATCTGCGGCGCTATCCCCGTTCGTTACGTCATGCCCTTATGCA
GGAGCTGACCCGGCTGGTCACCTATGAACCGGTGATTGGCATTATGGGCAAAACTGGCGTAGGGAAATCGAGCTTATGTA
ATGCGCTGTTTCGCAGCGAAGTCTGCGCAGTGAATGCTGTCGCAGCCTGTACCCGTGAGCCACAACGCATTCGCCTGCGT
TTTGGGCGTCATTATCTCACGCTGGTTGATTTACCCGGGGTGGGTGAAAGTCAGCAGCGGGATGAGGAATATCGCGCACT
GTACCAATCCCTGTTGCCGGAGCTGGATATGGTGCTGTGGGTATTGAAGGCGGATGACCGCGCCTATTCTGCCGAGGAAC
AGTTTTATCGGGATGTGTTCGGCTCCGTGAACGGTGAGCATACGCCGATACTCTGGCTGCTCAATCAGGTCGACAAGATT
GAACCGAGTGAAGAATGGCACTGGGCCTCTGCGCAGCCGTCATCCAGGCAACGGGAACATATGGCACAAAAGCGGGTGGC
TATCGGGCAACAACTCGGTATCGTGGCAGAGAACATTTTACCGCTTTCCGTTAAAGGCCGTTATCAACTGGGAAAAATGG
TGGAGGCGATGATAACCCTTCTCCCAAAGCAGGCTCGCAGTCCGGTCATTCCTCATTTACGTGCTGAGCACCAAACCGAA
AGCGCGATACAGCAGGCCAGGGCTGGATTTTCCGACACGGTAGTCAGTGCGGTGGATTGGGTTATTGACCACGCGCCGTT
GCCTCAGGTAGCAAAACAGGTGCTGCATGGCGTCACCCATTCCGTTGCCAGAGTGGCAAATGCCGTGTGGTCTTTCTTCT
TCGACTAA

Protein sequence :
MKKSSGYSLIRRHLRRYPRSLRHALMQELTRLVTYEPVIGIMGKTGVGKSSLCNALFRSEVCAVNAVAACTREPQRIRLR
FGRHYLTLVDLPGVGESQQRDEEYRALYQSLLPELDMVLWVLKADDRAYSAEEQFYRDVFGSVNGEHTPILWLLNQVDKI
EPSEEWHWASAQPSSRQREHMAQKRVAIGQQLGIVAENILPLSVKGRYQLGKMVEAMITLLPKQARSPVIPHLRAEHQTE
SAIQQARAGFSDTVVSAVDWVIDHAPLPQVAKQVLHGVTHSVARVANAVWSFFFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1210 NP_286745.1 histone Not tested TAI Protein 1e-45 44
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 1e-45 44
unnamed AAL99256.1 unknown Not tested LEE Protein 8e-47 44
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 7e-47 44
unnamed AAL08471.1 unknown Not tested SRL Protein 7e-47 44
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 3e-46 44
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 1e-46 44
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 1e-46 44
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 1e-45 44
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 2e-46 44
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 3e-46 43
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 8e-46 43
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 1e-45 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECA2860 YP_050951.1 hypothetical protein VFG1062 Protein 4e-47 44
ECA2860 YP_050951.1 hypothetical protein VFG1674 Protein 4e-47 44
ECA2860 YP_050951.1 hypothetical protein VFG0654 Protein 5e-46 43