Gene Information

Name : cbrD (ECA2806)
Accession : YP_050897.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : achromobactin transport ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3147401 - 3148240 bp
Length : 840 bp
Strand : -
Note : Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa

DNA sequence : 
ATGCTGTCAAAGAATGTGCCTCCAACAAATAGCGGTTCTCGCGAGGCGATTGCCAGTCAGTCGCTGACGCTAAGTTACGA
TAAGCAGATCGTCATTGACGCGCTGGATATTTCGCTGCCAGCCCAGAAAATTTCGGTGCTGGTGGGCAGTAACGGCTGCG
GCAAGAGCACGTTATTGAAGTCATTCGCCCGCCTGCTGAAACCAACGAGTGGAACGATTATTGTCAACGGGGCGGATATC
CATCGGCAATCCACCGTTGAGGTGGCGAAATCCCTGGCGATTTTGCCGCAAACACCGACCGCGCCGGAAGGCCTGACGGT
GTATCAACTGGTGAAAATGGGGCGTTACCCGCACCAGTCGTGGCTGAAGCAGTGGTCGACAACGGATGAGGAAAAAGTGC
TTCAGGCGTTGCGTAGTACTGGCGTGCTGGCATTAAAGGATCGCGCAGTCGATTCTCTGTCCGGCGGCCAGCGCCAGCGC
GTATGGATCGCGATGACGTTGGCGCAGGATACCGAAATCGTCCTGCTGGATGAGCCGACGACCTACCTCGATCTGGCGCA
TCAGATGGAGGTGCTGGATTTGCTACGGGAGTTGAATCTCCAGCAGCAGAAAACCATCGTCATGGTGCTGCATGATTTGA
ATCTGGCGTGCCGCTACGCACATCACATGGTGGCGGTACATGACCGGACGGTATTTGCACAGGGCAATCCGCGCGACATC
CTTACTGAAGCCACCGTAAAAACGGTGTTTAACCTGAATTGCCGCATTATTGACGATCCGTTCTTCGGCACGCCGCTGTG
TATTCCGTTTGGACGTGAAGCAGCGGCTGATGTCGGCTAA

Protein sequence : 
MLSKNVPPTNSGSREAIASQSLTLSYDKQIVIDALDISLPAQKISVLVGSNGCGKSTLLKSFARLLKPTSGTIIVNGADI
HRQSTVEVAKSLAILPQTPTAPEGLTVYQLVKMGRYPHQSWLKQWSTTDEEKVLQALRSTGVLALKDRAVDSLSGGQRQR
VWIAMTLAQDTEIVLLDEPTTYLDLAHQMEVLDLLRELNLQQQKTIVMVLHDLNLACRYAHHMVAVHDRTVFAQGNPRDI
LTEATVKTVFNLNCRIIDDPFFGTPLCIPFGREAAADVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-56 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-56 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-60 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-56 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-56 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-57 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-57 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-50 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_050897.1 achromobactin transport ATP-binding protein BAC0164 Protein 8e-51 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_050897.1 achromobactin transport ATP-binding protein VFG0925 Protein 4e-63 47
cbrD YP_050897.1 achromobactin transport ATP-binding protein VFG1042 Protein 7e-51 44